TY  - CONF
AU  - Simonović, Ana
AU  - Filipović, Biljana
AU  - Banjanac, Tijana
AU  - Kojić, Milan
AU  - Ćuković, Katarina
AU  - Subotić, Angelina
PY  - 2022
UR  - http://radar.ibiss.bg.ac.rs/handle/123456789/6205
AB  - Biljka kičica (Centaurium erythraea) je interesantna ne samo zbog svojih lekovitih svojstava, već i zbog izuzetne razvojne plastičnosti i regenerative sposobnosti u in vitro kulturi. Kako bi identifikovali gene uključene u morfogenetske procese, sekundarni metabolizam i odgovore na stres, pored sekvenciranih transkriptoma je potreban i sekvenciran genom. Za sekvenciranje genoma najmodernijom PacBio tehnologijom, neophodna je veoma čista visokomolekularna DNK, čijih 90% čine lanci > 20 kb. DNK je izolovana iz mladih listova diploidnog varijeteta kičice gajene in vitro, korišćenjem četiri različita protokola: (1) Quick-DNA HMW MagBead Kit (Zymo Research, #D6060); (2) modifikovani CTAB protokol; (3) protokol za izolaciju bakterijske DNK prilagođen biljnim tkivima i (4) izmenjen protokol za izolaciju RNK iz bora. Kvalitet DNK izolata je proveravan spektrofotometrijski Nano Drop aparatom, običnom elektroforezom, pulsnom elektroforezom i Femto Pulsnom analizom. Protokol (1) daje veoma niske prinose, bilo kad se koristi samostalno ili kao vid prečišćavanja DNK izolovane na drugi način. Protokolom (3) se dobija visok prinos DNK nezadovoljavajućeg kvaliteta. Najkvalitetniju DNK u količinama dovoljnim za sekvenciranje su dali protokoli (2) i (4).
AB  - Биљка кичица (Centaurium erythraea) је интересантна не само због својих
лековитих својстава, већ и због изузетне развојне пластичности и регенеративе
способности у in vitro култури. Како би идентификовали гене укључене у
морфогенетске процесе, секундарни метаболизам и одговоре на стрес, поред
секвенцираних транскриптома1 је потребан и секвенциран геном. За секвенцирање
генома најмодернијом PacBio технологијом, неопходна је веома чиста
високомолекуларна ДНК, чијих 90% чине ланци > 20 kb. ДНК је изолована из
младих листова диплоидног варијетета кичице гајене in vitro, коришћењем четири
различита протокола: (1) Quick-DNA HMW MagBead Kit (Zymo Research, #D6060);
(2) модификовани ЦТАБ протокол;2 (3) протокол за изолацију бактеријске ДНК
прилагођен биљним ткивима и (4) измењен протокол за изолацију РНК из бора.3
Квалитет ДНК изолата је провераван спектрофотометријски Nano Drop апаратом,
обичном електрофорезом, пулсном електрофорезом и Фемто Пулсном анализом.
Протокол (1) даје веома ниске приносе, било кад се користи самостално или као
вид пречишћавања ДНК изоловане на други начин. Протоколом (3) се добија висок
принос ДНК незадовољавајућег квалитета. Најквалитетнију ДНК у количинама
довољним за секвенцирање су дали протоколи (2) и (4).
PB  - Belgrade: Serbian Biological Society
C3  - Knjiga sažetaka: Treći Kongres biologa Srbije: Osnovna i primenjena istraživanja: Metodika nastave; 2022 Sep 21-25; Zlatibor, Serbia
T1  - Usavršavanje protokola za izolaciju DNK visoke molekularne mase iz kičice (Centaurium erythraea)
T1  - Усавршавање протокола за изолацију ДНК високе молекуларне масе из кичице (Centaurium erythraea)
SP  - 295
UR  - https://hdl.handle.net/21.15107/rcub_ibiss_6205
ER  - 

@conference{
author = "Simonović, Ana and Filipović, Biljana and Banjanac, Tijana and Kojić, Milan and Ćuković, Katarina and Subotić, Angelina",
year = "2022",
abstract = "Biljka kičica (Centaurium erythraea) je interesantna ne samo zbog svojih lekovitih svojstava, već i zbog izuzetne razvojne plastičnosti i regenerative sposobnosti u in vitro kulturi. Kako bi identifikovali gene uključene u morfogenetske procese, sekundarni metabolizam i odgovore na stres, pored sekvenciranih transkriptoma je potreban i sekvenciran genom. Za sekvenciranje genoma najmodernijom PacBio tehnologijom, neophodna je veoma čista visokomolekularna DNK, čijih 90% čine lanci > 20 kb. DNK je izolovana iz mladih listova diploidnog varijeteta kičice gajene in vitro, korišćenjem četiri različita protokola: (1) Quick-DNA HMW MagBead Kit (Zymo Research, #D6060); (2) modifikovani CTAB protokol; (3) protokol za izolaciju bakterijske DNK prilagođen biljnim tkivima i (4) izmenjen protokol za izolaciju RNK iz bora. Kvalitet DNK izolata je proveravan spektrofotometrijski Nano Drop aparatom, običnom elektroforezom, pulsnom elektroforezom i Femto Pulsnom analizom. Protokol (1) daje veoma niske prinose, bilo kad se koristi samostalno ili kao vid prečišćavanja DNK izolovane na drugi način. Protokolom (3) se dobija visok prinos DNK nezadovoljavajućeg kvaliteta. Najkvalitetniju DNK u količinama dovoljnim za sekvenciranje su dali protokoli (2) i (4)., Биљка кичица (Centaurium erythraea) је интересантна не само због својих
лековитих својстава, већ и због изузетне развојне пластичности и регенеративе
способности у in vitro култури. Како би идентификовали гене укључене у
морфогенетске процесе, секундарни метаболизам и одговоре на стрес, поред
секвенцираних транскриптома1 је потребан и секвенциран геном. За секвенцирање
генома најмодернијом PacBio технологијом, неопходна је веома чиста
високомолекуларна ДНК, чијих 90% чине ланци > 20 kb. ДНК је изолована из
младих листова диплоидног варијетета кичице гајене in vitro, коришћењем четири
различита протокола: (1) Quick-DNA HMW MagBead Kit (Zymo Research, #D6060);
(2) модификовани ЦТАБ протокол;2 (3) протокол за изолацију бактеријске ДНК
прилагођен биљним ткивима и (4) измењен протокол за изолацију РНК из бора.3
Квалитет ДНК изолата је провераван спектрофотометријски Nano Drop апаратом,
обичном електрофорезом, пулсном електрофорезом и Фемто Пулсном анализом.
Протокол (1) даје веома ниске приносе, било кад се користи самостално или као
вид пречишћавања ДНК изоловане на други начин. Протоколом (3) се добија висок
принос ДНК незадовољавајућег квалитета. Најквалитетнију ДНК у количинама
довољним за секвенцирање су дали протоколи (2) и (4).",
publisher = "Belgrade: Serbian Biological Society",
journal = "Knjiga sažetaka: Treći Kongres biologa Srbije: Osnovna i primenjena istraživanja: Metodika nastave; 2022 Sep 21-25; Zlatibor, Serbia",
title = "Usavršavanje protokola za izolaciju DNK visoke molekularne mase iz kičice (Centaurium erythraea), Усавршавање протокола за изолацију ДНК високе молекуларне масе из кичице (Centaurium erythraea)",
pages = "295",
url = "https://hdl.handle.net/21.15107/rcub_ibiss_6205"
}

Simonović, A., Filipović, B., Banjanac, T., Kojić, M., Ćuković, K.,& Subotić, A.. (2022). Usavršavanje protokola za izolaciju DNK visoke molekularne mase iz kičice (Centaurium erythraea). in Knjiga sažetaka: Treći Kongres biologa Srbije: Osnovna i primenjena istraživanja: Metodika nastave; 2022 Sep 21-25; Zlatibor, Serbia
Belgrade: Serbian Biological Society., 295.
https://hdl.handle.net/21.15107/rcub_ibiss_6205

Simonović A, Filipović B, Banjanac T, Kojić M, Ćuković K, Subotić A. Usavršavanje protokola za izolaciju DNK visoke molekularne mase iz kičice (Centaurium erythraea). in Knjiga sažetaka: Treći Kongres biologa Srbije: Osnovna i primenjena istraživanja: Metodika nastave; 2022 Sep 21-25; Zlatibor, Serbia. 2022;:295.
https://hdl.handle.net/21.15107/rcub_ibiss_6205 .

Simonović, Ana, Filipović, Biljana, Banjanac, Tijana, Kojić, Milan, Ćuković, Katarina, Subotić, Angelina, "Usavršavanje protokola za izolaciju DNK visoke molekularne mase iz kičice (Centaurium erythraea)" in Knjiga sažetaka: Treći Kongres biologa Srbije: Osnovna i primenjena istraživanja: Metodika nastave; 2022 Sep 21-25; Zlatibor, Serbia (2022):295,
https://hdl.handle.net/21.15107/rcub_ibiss_6205 .

TY  - JOUR
AU  - Mirković, Nemanja
AU  - Kulaš, Jelena
AU  - Miloradović, Zorana
AU  - Miljković, Marija
AU  - Tucović, Dina
AU  - Miocionović, Jelena
AU  - Jovčić, Branko
AU  - Mirkov, Ivana
AU  - Kojić, Milan
PY  - 2020
UR  - internal-pdf://Mirkovic et al. - 2020 - Lactolisterin BU-producer Lactococcus lactis subsp. lactis BGBU1-4 Bio-control of Listeria monocytogenes and St.pdf
UR  - https://radar.ibiss.bg.ac.rs/handle/123456789/3593
AB  - In last two decades, there has been a strong trend in the application of lactic acid bacteria as adjunctive cultures to control growth of spoilage and pathogenic bacteria in food. One of the most important properties that contribute to the application of these bacteria is the production of antimicrobial molecules. Lactococcus lactis subsp. lactis BGBU1-4, isolated from traditional brined cheese, produces thermostable bacteriocin named lactolisterin BU, with broad spectrum of activity against spoilage bacteria and foodborne pathogens. In this study, effect of strain BGBU1-4, as adjunct culture, on the numbers of Listeria monocytogenes ATCC19111 and Staphylococcus aureus LMM322 in artificially contaminated Quark-type, soft acid coagulated cheese, was examined. In addition, we analyzed influence of BGBU1-4 on chemical and sensory properties of the cheese, as well as immunological response of Albino oxford rats fed with Quark-type of cheese made using BGBU1-4 as adjunct culture. Results of this study revealed antibacterial potential of strain BGBU1-4 against L. monocytogenes ATCC19111 and S. aureus LMM322 in Quark-type cheese during 21 days of storage at 4 °C. Also, it was noticed the ability of BGBU1-4 to control the spontaneously grown yeasts and molds. Chemical composition and pH values of cheese containing BGBU1-4 were unchanged in comparison to control. The sensory quality scores showed that there was difference between cheese with and without adjunct culture in terms of flavor and oral texture, while for the odor and appearance no differences between two cheese variants were scored. Results of the immunological response of Albino rats fed with Quark-type cheese containing BGBU1-4 indicate absence of systematic inflammation. However, increased pro-inflammatory cytokines content (IL-1β, IL-6, IL-17) in intestine of rats fed with cheese containing BGBU1-4, concomitantly with unchanged anti-inflammatory cytokines suggests disruption of gut homeostasis and inflammation in this tissue. The changes caused by BGBU1-4 are reversible, system returns into homeostasis seven days after cessation of feeding with cheese containing BGBU1-4.
T2  - Food Control
T1  - Lactolisterin BU-producer Lactococcus lactis subsp. lactis BGBU1-4: Bio-control of Listeria monocytogenes and Staphylocococcus aureus in fresh soft cheese and effect on immunological response of rats
VL  - 111
DO  - 10.1016/j.foodcont.2019.107076
SP  - 107076
ER  - 

@article{
author = "Mirković, Nemanja and Kulaš, Jelena and Miloradović, Zorana and Miljković, Marija and Tucović, Dina and Miocionović, Jelena and Jovčić, Branko and Mirkov, Ivana and Kojić, Milan",
year = "2020",
abstract = "In last two decades, there has been a strong trend in the application of lactic acid bacteria as adjunctive cultures to control growth of spoilage and pathogenic bacteria in food. One of the most important properties that contribute to the application of these bacteria is the production of antimicrobial molecules. Lactococcus lactis subsp. lactis BGBU1-4, isolated from traditional brined cheese, produces thermostable bacteriocin named lactolisterin BU, with broad spectrum of activity against spoilage bacteria and foodborne pathogens. In this study, effect of strain BGBU1-4, as adjunct culture, on the numbers of Listeria monocytogenes ATCC19111 and Staphylococcus aureus LMM322 in artificially contaminated Quark-type, soft acid coagulated cheese, was examined. In addition, we analyzed influence of BGBU1-4 on chemical and sensory properties of the cheese, as well as immunological response of Albino oxford rats fed with Quark-type of cheese made using BGBU1-4 as adjunct culture. Results of this study revealed antibacterial potential of strain BGBU1-4 against L. monocytogenes ATCC19111 and S. aureus LMM322 in Quark-type cheese during 21 days of storage at 4 °C. Also, it was noticed the ability of BGBU1-4 to control the spontaneously grown yeasts and molds. Chemical composition and pH values of cheese containing BGBU1-4 were unchanged in comparison to control. The sensory quality scores showed that there was difference between cheese with and without adjunct culture in terms of flavor and oral texture, while for the odor and appearance no differences between two cheese variants were scored. Results of the immunological response of Albino rats fed with Quark-type cheese containing BGBU1-4 indicate absence of systematic inflammation. However, increased pro-inflammatory cytokines content (IL-1β, IL-6, IL-17) in intestine of rats fed with cheese containing BGBU1-4, concomitantly with unchanged anti-inflammatory cytokines suggests disruption of gut homeostasis and inflammation in this tissue. The changes caused by BGBU1-4 are reversible, system returns into homeostasis seven days after cessation of feeding with cheese containing BGBU1-4.",
journal = "Food Control",
title = "Lactolisterin BU-producer Lactococcus lactis subsp. lactis BGBU1-4: Bio-control of Listeria monocytogenes and Staphylocococcus aureus in fresh soft cheese and effect on immunological response of rats",
volume = "111",
doi = "10.1016/j.foodcont.2019.107076",
pages = "107076"
}

Mirković, N., Kulaš, J., Miloradović, Z., Miljković, M., Tucović, D., Miocionović, J., Jovčić, B., Mirkov, I.,& Kojić, M.. (2020). Lactolisterin BU-producer Lactococcus lactis subsp. lactis BGBU1-4: Bio-control of Listeria monocytogenes and Staphylocococcus aureus in fresh soft cheese and effect on immunological response of rats. in Food Control, 111, 107076.
https://doi.org/10.1016/j.foodcont.2019.107076

Mirković N, Kulaš J, Miloradović Z, Miljković M, Tucović D, Miocionović J, Jovčić B, Mirkov I, Kojić M. Lactolisterin BU-producer Lactococcus lactis subsp. lactis BGBU1-4: Bio-control of Listeria monocytogenes and Staphylocococcus aureus in fresh soft cheese and effect on immunological response of rats. in Food Control. 2020;111:107076.
doi:10.1016/j.foodcont.2019.107076 .

Mirković, Nemanja, Kulaš, Jelena, Miloradović, Zorana, Miljković, Marija, Tucović, Dina, Miocionović, Jelena, Jovčić, Branko, Mirkov, Ivana, Kojić, Milan, "Lactolisterin BU-producer Lactococcus lactis subsp. lactis BGBU1-4: Bio-control of Listeria monocytogenes and Staphylocococcus aureus in fresh soft cheese and effect on immunological response of rats" in Food Control, 111 (2020):107076,
https://doi.org/10.1016/j.foodcont.2019.107076 . .

TY  - JOUR
AU  - Stanisavljević, Suzana
AU  - Lukić, Jovanka
AU  - Momčilović, Miljana
AU  - Miljković, Marija
AU  - Jevtić, Bojan
AU  - Kojić, Milan
AU  - Golić, Nataša
AU  - Mostarica Stojković, Marija
AU  - Miljković, Đorđe
PY  - 2016
UR  - http://radar.ibiss.bg.ac.rs/handle/123456789/6049
AB  - Gut microbiota and gut-associated lymphoid tissue have been increasingly appreciated as important players in pathogenesis of various autoimmune diseases, including multiple sclerosis. Experimental autoimmune encephalomyelitis (EAE) is an animal model of multiple sclerosis that can be induced with an injection of spinal cord homogenate emulsified in complete Freund's adjuvant in Dark Agouti (DA) rats, but not in Albino Oxford (AO) rats. In this study, mesenteric lymph nodes (MLN), Peyer's patches (PP) and gut microbiota were analysed in these two rat strains. There was higher proportion of CD4(+) T cells and regulatory T cells in non-immunised DA rats in comparison to AO rats. Also, DA rat MLN and PP cells were higher producers of pro-inflammatory cytokines interferon-γ and interleukin-17. Finally, microbial analyses showed that uncultivated species of Turicibacter and Atopostipes genus were exclusively present in AO rats, in faeces and intestinal tissue, respectively. Thus, it is clear that in comparison of an EAE-susceptible with an EAE-resistant strain of rats, various discrepancies at the level of gut associated lymphoid tissue, as well as at the level of gut microbiota can be observed. Future studies should determine if the differences have functional significance for EAE pathogenesis.
PB  - Wageningen Academic Publishers
T2  - Beneficial Microbes
T1  - Gut-associated lymphoid tissue, gut microbes and susceptibility to experimental autoimmune encephalomyelitis
IS  - 3
VL  - 7
DO  - 10.3920/BM2015.0159
SP  - 363
EP  - 373
ER  - 

@article{
author = "Stanisavljević, Suzana and Lukić, Jovanka and Momčilović, Miljana and Miljković, Marija and Jevtić, Bojan and Kojić, Milan and Golić, Nataša and Mostarica Stojković, Marija and Miljković, Đorđe",
year = "2016",
abstract = "Gut microbiota and gut-associated lymphoid tissue have been increasingly appreciated as important players in pathogenesis of various autoimmune diseases, including multiple sclerosis. Experimental autoimmune encephalomyelitis (EAE) is an animal model of multiple sclerosis that can be induced with an injection of spinal cord homogenate emulsified in complete Freund's adjuvant in Dark Agouti (DA) rats, but not in Albino Oxford (AO) rats. In this study, mesenteric lymph nodes (MLN), Peyer's patches (PP) and gut microbiota were analysed in these two rat strains. There was higher proportion of CD4(+) T cells and regulatory T cells in non-immunised DA rats in comparison to AO rats. Also, DA rat MLN and PP cells were higher producers of pro-inflammatory cytokines interferon-γ and interleukin-17. Finally, microbial analyses showed that uncultivated species of Turicibacter and Atopostipes genus were exclusively present in AO rats, in faeces and intestinal tissue, respectively. Thus, it is clear that in comparison of an EAE-susceptible with an EAE-resistant strain of rats, various discrepancies at the level of gut associated lymphoid tissue, as well as at the level of gut microbiota can be observed. Future studies should determine if the differences have functional significance for EAE pathogenesis.",
publisher = "Wageningen Academic Publishers",
journal = "Beneficial Microbes",
title = "Gut-associated lymphoid tissue, gut microbes and susceptibility to experimental autoimmune encephalomyelitis",
number = "3",
volume = "7",
doi = "10.3920/BM2015.0159",
pages = "363-373"
}

Stanisavljević, S., Lukić, J., Momčilović, M., Miljković, M., Jevtić, B., Kojić, M., Golić, N., Mostarica Stojković, M.,& Miljković, Đ.. (2016). Gut-associated lymphoid tissue, gut microbes and susceptibility to experimental autoimmune encephalomyelitis. in Beneficial Microbes
Wageningen Academic Publishers., 7(3), 363-373.
https://doi.org/10.3920/BM2015.0159

Stanisavljević S, Lukić J, Momčilović M, Miljković M, Jevtić B, Kojić M, Golić N, Mostarica Stojković M, Miljković Đ. Gut-associated lymphoid tissue, gut microbes and susceptibility to experimental autoimmune encephalomyelitis. in Beneficial Microbes. 2016;7(3):363-373.
doi:10.3920/BM2015.0159 .

Stanisavljević, Suzana, Lukić, Jovanka, Momčilović, Miljana, Miljković, Marija, Jevtić, Bojan, Kojić, Milan, Golić, Nataša, Mostarica Stojković, Marija, Miljković, Đorđe, "Gut-associated lymphoid tissue, gut microbes and susceptibility to experimental autoimmune encephalomyelitis" in Beneficial Microbes, 7, no. 3 (2016):363-373,
https://doi.org/10.3920/BM2015.0159 . .