Malkov, Saša

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Author's Bibliography

Variation in the frequency of B chromosomes in small isolated populations of Apodemus flavicollis

Blagojević, Jelena; Malkov, Saša; Rajičić, Marija; Rončević, Aleksa; Budinski, Ivana; Bajić, Branka; Miljević, Milan; Vujošević, Mladen

(Springer Nature, 2023)

TY  - CONF
AU  - Blagojević, Jelena
AU  - Malkov, Saša
AU  - Rajičić, Marija
AU  - Rončević, Aleksa
AU  - Budinski, Ivana
AU  - Bajić, Branka
AU  - Miljević, Milan
AU  - Vujošević, Mladen
PY  - 2023
UR  - http://radar.ibiss.bg.ac.rs/handle/123456789/6428
AB  - Background
Long-term studies on B chromosome (Bs) dynamics in natural populations of yellow-necked mice, Apodemus flavicollis, have unveiled intriguing seasonal variations influenced by environmental factors. On average, one third of animals possessed Bs in large natural populations. Urbanization, a potent catalyst for genetic diversity alterations, brings about habitat fragmentation and degradation, producing patches of small forested areas within urban landscapes. These fragmented habitats pose significant challenges for small mammal populations as migration and gene flow are severely restricted. To comprehensively grasp the repercussions of urbanization on B chromosome frequency, we embarked on a study within the Belgrade region.
Materials and Methods
The frequency of individuals with B chromosomes in five urban isolated forests populations of A. flavicollis has been studied. Employing live animal traps, we collected samples, and chromosome preparation was done directly from the bone marrow. Each animal’s karyotype was analysed through examination of twenty metaphase figures.
Results
A total of 246 animals were sampled across five forest sites within the Belgrade territory and underwent karyotyping. The prevalence of animals with Bs exhibited remarkable variability, ranging from 3% to 50%.
Intriguingly, at four of the sites, the incidence of Bs was significantly lower (ranging from 3% to 13%) compared to the average frequencies observed in natural populations. Conversely, at one site, the frequency soared to an exceptionally high 50%. Since all studied localities are at short distances from each other, climatic factors could be considered as the same. However, the studied sites differ in size and the level of adaptation to people’s urban life. In a bid to elucidate the driving factors behind frequency variation, we developed a model simulating the influence of genetic drift, the predominant evolutionary force in small, isolated populations.
Conclusions
Beyond investigations focused on the molecular structure and origin of B chromosomes, it becomes evident that a comprehensive understanding necessitates population-level research, shedding light on
the intricate mechanisms governing their persistence across diverse environments.
PB  - Springer Nature
C3  - Meeting Abstracts from the 5th B Chromosome Conference; 2023 Oct 14-17; Petnica, Serbia
T1  - Variation in the frequency of B chromosomes in small isolated populations of Apodemus flavicollis
DO  - 10.1186/s12919-023-00284-9
SP  - 33
ER  - 
@conference{
author = "Blagojević, Jelena and Malkov, Saša and Rajičić, Marija and Rončević, Aleksa and Budinski, Ivana and Bajić, Branka and Miljević, Milan and Vujošević, Mladen",
year = "2023",
abstract = "Background
Long-term studies on B chromosome (Bs) dynamics in natural populations of yellow-necked mice, Apodemus flavicollis, have unveiled intriguing seasonal variations influenced by environmental factors. On average, one third of animals possessed Bs in large natural populations. Urbanization, a potent catalyst for genetic diversity alterations, brings about habitat fragmentation and degradation, producing patches of small forested areas within urban landscapes. These fragmented habitats pose significant challenges for small mammal populations as migration and gene flow are severely restricted. To comprehensively grasp the repercussions of urbanization on B chromosome frequency, we embarked on a study within the Belgrade region.
Materials and Methods
The frequency of individuals with B chromosomes in five urban isolated forests populations of A. flavicollis has been studied. Employing live animal traps, we collected samples, and chromosome preparation was done directly from the bone marrow. Each animal’s karyotype was analysed through examination of twenty metaphase figures.
Results
A total of 246 animals were sampled across five forest sites within the Belgrade territory and underwent karyotyping. The prevalence of animals with Bs exhibited remarkable variability, ranging from 3% to 50%.
Intriguingly, at four of the sites, the incidence of Bs was significantly lower (ranging from 3% to 13%) compared to the average frequencies observed in natural populations. Conversely, at one site, the frequency soared to an exceptionally high 50%. Since all studied localities are at short distances from each other, climatic factors could be considered as the same. However, the studied sites differ in size and the level of adaptation to people’s urban life. In a bid to elucidate the driving factors behind frequency variation, we developed a model simulating the influence of genetic drift, the predominant evolutionary force in small, isolated populations.
Conclusions
Beyond investigations focused on the molecular structure and origin of B chromosomes, it becomes evident that a comprehensive understanding necessitates population-level research, shedding light on
the intricate mechanisms governing their persistence across diverse environments.",
publisher = "Springer Nature",
journal = "Meeting Abstracts from the 5th B Chromosome Conference; 2023 Oct 14-17; Petnica, Serbia",
title = "Variation in the frequency of B chromosomes in small isolated populations of Apodemus flavicollis",
doi = "10.1186/s12919-023-00284-9",
pages = "33"
}
Blagojević, J., Malkov, S., Rajičić, M., Rončević, A., Budinski, I., Bajić, B., Miljević, M.,& Vujošević, M.. (2023). Variation in the frequency of B chromosomes in small isolated populations of Apodemus flavicollis. in Meeting Abstracts from the 5th B Chromosome Conference; 2023 Oct 14-17; Petnica, Serbia
Springer Nature., 33.
https://doi.org/10.1186/s12919-023-00284-9
Blagojević J, Malkov S, Rajičić M, Rončević A, Budinski I, Bajić B, Miljević M, Vujošević M. Variation in the frequency of B chromosomes in small isolated populations of Apodemus flavicollis. in Meeting Abstracts from the 5th B Chromosome Conference; 2023 Oct 14-17; Petnica, Serbia. 2023;:33.
doi:10.1186/s12919-023-00284-9 .
Blagojević, Jelena, Malkov, Saša, Rajičić, Marija, Rončević, Aleksa, Budinski, Ivana, Bajić, Branka, Miljević, Milan, Vujošević, Mladen, "Variation in the frequency of B chromosomes in small isolated populations of Apodemus flavicollis" in Meeting Abstracts from the 5th B Chromosome Conference; 2023 Oct 14-17; Petnica, Serbia (2023):33,
https://doi.org/10.1186/s12919-023-00284-9 . .

Pursuit for transcriptome microsatellites towards estimation of genetic variation, species discrimination and detection of interspecific hybrids within the genus Centaurium

Banjanac, Tijana; Belamarić, Mario; Skorić, Marijana; Mišić, Danijela; Malkov, Saša; Jelić, Mihailo; Šiler, Branislav

(Belgrade: Serbian Plant Physiology Society: Institute for Biological Research “Siniša Stanković”, 2015)

TY  - CONF
AU  - Banjanac, Tijana
AU  - Belamarić, Mario
AU  - Skorić, Marijana
AU  - Mišić, Danijela
AU  - Malkov, Saša
AU  - Jelić, Mihailo
AU  - Šiler, Branislav
PY  - 2015
UR  - http://radar.ibiss.bg.ac.rs/handle/123456789/6776
AB  - Over the last few decades, microsatellites have been the markers of choice for applications in both plant populations and conservation genetics. Unassembled 114bp long transcriptome sequences of Centaurium erythraea Rafn, obtained by Illumina GAIIx System, were complementary paired to make contigs of 170-200bp which were used as a starting material for microsatellite mining. Identification and bioinformatics filtering of microsatellite-containing sequences were carried out employing open-source and free software components operational on an average-performance computer. The designing of primers was performed for 16 selected sequences. Transferability of microsatellite loci was assayed on 22 individual plants originating in the Balkan Peninsula which belong to 7 different taxa of the genus Centaurium including three species, two subspecies and five specimens with assumed hybrid constitution. Out of 16 primer pairs tested, 9 were successfully amplified showing high-quality and reproducible bands on 2.5% agarose gels. Seven out of nine functional loci amplified in all taxa accessions, while two loci had the ability to clearly discriminate between the taxa. Further validation of developed microsatellite markers was performed by Lab--on Chip technology using Agilent 2100 Bioanalyzer in order to detect polymorphism of microsatellite loci and to assess their range. Eight loci displayed transferability and variability, obtained microsatellite loci are standing for powerful tool for future studies on discrimination of species within the genus Centaurium, estimation of their genetic variation, and for tracking interspecific hybridization among them.
PB  - Belgrade: Serbian Plant Physiology Society: Institute for Biological Research “Siniša Stanković”
C3  - Book of Abstracts: 2nd International Conference on Plant Biology, 21th Symposium of the Serbian Plant Physiology Society, and CОST Action FA1106 Quality Fruit Workshop; 2015 Jun 17-20; Petnica, Serbia
T1  - Pursuit for transcriptome microsatellites towards estimation of genetic variation, species discrimination and detection of interspecific hybrids within the genus Centaurium
SP  - 119
EP  - 120
UR  - https://hdl.handle.net/21.15107/rcub_ibiss_6776
ER  - 
@conference{
author = "Banjanac, Tijana and Belamarić, Mario and Skorić, Marijana and Mišić, Danijela and Malkov, Saša and Jelić, Mihailo and Šiler, Branislav",
year = "2015",
abstract = "Over the last few decades, microsatellites have been the markers of choice for applications in both plant populations and conservation genetics. Unassembled 114bp long transcriptome sequences of Centaurium erythraea Rafn, obtained by Illumina GAIIx System, were complementary paired to make contigs of 170-200bp which were used as a starting material for microsatellite mining. Identification and bioinformatics filtering of microsatellite-containing sequences were carried out employing open-source and free software components operational on an average-performance computer. The designing of primers was performed for 16 selected sequences. Transferability of microsatellite loci was assayed on 22 individual plants originating in the Balkan Peninsula which belong to 7 different taxa of the genus Centaurium including three species, two subspecies and five specimens with assumed hybrid constitution. Out of 16 primer pairs tested, 9 were successfully amplified showing high-quality and reproducible bands on 2.5% agarose gels. Seven out of nine functional loci amplified in all taxa accessions, while two loci had the ability to clearly discriminate between the taxa. Further validation of developed microsatellite markers was performed by Lab--on Chip technology using Agilent 2100 Bioanalyzer in order to detect polymorphism of microsatellite loci and to assess their range. Eight loci displayed transferability and variability, obtained microsatellite loci are standing for powerful tool for future studies on discrimination of species within the genus Centaurium, estimation of their genetic variation, and for tracking interspecific hybridization among them.",
publisher = "Belgrade: Serbian Plant Physiology Society: Institute for Biological Research “Siniša Stanković”",
journal = "Book of Abstracts: 2nd International Conference on Plant Biology, 21th Symposium of the Serbian Plant Physiology Society, and CОST Action FA1106 Quality Fruit Workshop; 2015 Jun 17-20; Petnica, Serbia",
title = "Pursuit for transcriptome microsatellites towards estimation of genetic variation, species discrimination and detection of interspecific hybrids within the genus Centaurium",
pages = "119-120",
url = "https://hdl.handle.net/21.15107/rcub_ibiss_6776"
}
Banjanac, T., Belamarić, M., Skorić, M., Mišić, D., Malkov, S., Jelić, M.,& Šiler, B.. (2015). Pursuit for transcriptome microsatellites towards estimation of genetic variation, species discrimination and detection of interspecific hybrids within the genus Centaurium. in Book of Abstracts: 2nd International Conference on Plant Biology, 21th Symposium of the Serbian Plant Physiology Society, and CОST Action FA1106 Quality Fruit Workshop; 2015 Jun 17-20; Petnica, Serbia
Belgrade: Serbian Plant Physiology Society: Institute for Biological Research “Siniša Stanković”., 119-120.
https://hdl.handle.net/21.15107/rcub_ibiss_6776
Banjanac T, Belamarić M, Skorić M, Mišić D, Malkov S, Jelić M, Šiler B. Pursuit for transcriptome microsatellites towards estimation of genetic variation, species discrimination and detection of interspecific hybrids within the genus Centaurium. in Book of Abstracts: 2nd International Conference on Plant Biology, 21th Symposium of the Serbian Plant Physiology Society, and CОST Action FA1106 Quality Fruit Workshop; 2015 Jun 17-20; Petnica, Serbia. 2015;:119-120.
https://hdl.handle.net/21.15107/rcub_ibiss_6776 .
Banjanac, Tijana, Belamarić, Mario, Skorić, Marijana, Mišić, Danijela, Malkov, Saša, Jelić, Mihailo, Šiler, Branislav, "Pursuit for transcriptome microsatellites towards estimation of genetic variation, species discrimination and detection of interspecific hybrids within the genus Centaurium" in Book of Abstracts: 2nd International Conference on Plant Biology, 21th Symposium of the Serbian Plant Physiology Society, and CОST Action FA1106 Quality Fruit Workshop; 2015 Jun 17-20; Petnica, Serbia (2015):119-120,
https://hdl.handle.net/21.15107/rcub_ibiss_6776 .