TY  - CONF
AU  - Ćosić, Tatjana
AU  - Motyka, Václav
AU  - Raspor, Martin
AU  - Sajid, Sumbal
AU  - Savić, Jelena
AU  - Devrnja, Nina
AU  - Dobrev, Petre I.
AU  - Ninković, Slavica
PY  - 2022
UR  - http://radar.ibiss.bg.ac.rs/handle/123456789/5364
AB  - This study fathoms a comprehensive hormone profiling of four growth stages of kohlrabi
(Brassica oleracea var. gongylodes) seedlings in vitro (T1-T4), including the effects of cytokinins, CKs
(trans-zeatin, transZ; thidiazuron, TDZ), and high sucrose concentration (6% and 9%). Depending
on the type of investigated phytohormone and its metabolite, individual changes were observed
on a time scale, showing specific hormone profiles. A significant increase in the content of endogenous
zeatin nucleobases and gibberellin GA20 was detected at T2 stage (plantlets with two
emerged leaves). However, levels of jasmonic acid, JA-isoleucine, indole-3-acetic acid (IAA) and
indole-3-acetamide significantly increased as development progressed (T3), whereas content of
most of analysed IAA metabolites decreased. Supplementing growth media with CKs induced de
novo shoot formation during seedling development, and both CK and sucrose treatments caused
significant changes in levels of most of the phytohormone groups at each developmental stage
compared to control. Principal component analysis indicated that sucrose treatments, particularly
9%, had a stronger effect on the content of endogenous hormones than the CK treatments. The
difference between two CK treatments proved to be remarkable at T1, T2, and T3 stages, while
at the last stage difference was much smaller. The joint application of CKs and high sucrose concentration
showed diverse relations depending on the metabolite, growth stage and amount of
sucrose used. The most striking increase was induced in T4 for zeatin nucleobases when transZ
and 9% sucrose were applied. Our results indicate specific patterns of metabolic balance during
kohlrabi in vitro development and regeneration, revealing a complex interplay of different phytohormonal
groups with CKs and sucrose.
PB  - Belgrade: Serbian Plant Physiology Society
C3  - 4th International Conference on Plant Biology [and] 23rd SPPS Meeting; 2022 Oct 6-8; Belgrade, Serbia
T1  - Phytohormone homeostasis in in vitro grown kohlrabi: the effect of cytokinins and sucrose
SP  - 24
UR  - https://hdl.handle.net/21.15107/rcub_ibiss_5364
ER  - 

@conference{
author = "Ćosić, Tatjana and Motyka, Václav and Raspor, Martin and Sajid, Sumbal and Savić, Jelena and Devrnja, Nina and Dobrev, Petre I. and Ninković, Slavica",
year = "2022",
abstract = "This study fathoms a comprehensive hormone profiling of four growth stages of kohlrabi
(Brassica oleracea var. gongylodes) seedlings in vitro (T1-T4), including the effects of cytokinins, CKs
(trans-zeatin, transZ; thidiazuron, TDZ), and high sucrose concentration (6% and 9%). Depending
on the type of investigated phytohormone and its metabolite, individual changes were observed
on a time scale, showing specific hormone profiles. A significant increase in the content of endogenous
zeatin nucleobases and gibberellin GA20 was detected at T2 stage (plantlets with two
emerged leaves). However, levels of jasmonic acid, JA-isoleucine, indole-3-acetic acid (IAA) and
indole-3-acetamide significantly increased as development progressed (T3), whereas content of
most of analysed IAA metabolites decreased. Supplementing growth media with CKs induced de
novo shoot formation during seedling development, and both CK and sucrose treatments caused
significant changes in levels of most of the phytohormone groups at each developmental stage
compared to control. Principal component analysis indicated that sucrose treatments, particularly
9%, had a stronger effect on the content of endogenous hormones than the CK treatments. The
difference between two CK treatments proved to be remarkable at T1, T2, and T3 stages, while
at the last stage difference was much smaller. The joint application of CKs and high sucrose concentration
showed diverse relations depending on the metabolite, growth stage and amount of
sucrose used. The most striking increase was induced in T4 for zeatin nucleobases when transZ
and 9% sucrose were applied. Our results indicate specific patterns of metabolic balance during
kohlrabi in vitro development and regeneration, revealing a complex interplay of different phytohormonal
groups with CKs and sucrose.",
publisher = "Belgrade: Serbian Plant Physiology Society",
journal = "4th International Conference on Plant Biology [and] 23rd SPPS Meeting; 2022 Oct 6-8; Belgrade, Serbia",
title = "Phytohormone homeostasis in in vitro grown kohlrabi: the effect of cytokinins and sucrose",
pages = "24",
url = "https://hdl.handle.net/21.15107/rcub_ibiss_5364"
}

Ćosić, T., Motyka, V., Raspor, M., Sajid, S., Savić, J., Devrnja, N., Dobrev, P. I.,& Ninković, S.. (2022). Phytohormone homeostasis in in vitro grown kohlrabi: the effect of cytokinins and sucrose. in 4th International Conference on Plant Biology [and] 23rd SPPS Meeting; 2022 Oct 6-8; Belgrade, Serbia
Belgrade: Serbian Plant Physiology Society., 24.
https://hdl.handle.net/21.15107/rcub_ibiss_5364

Ćosić T, Motyka V, Raspor M, Sajid S, Savić J, Devrnja N, Dobrev PI, Ninković S. Phytohormone homeostasis in in vitro grown kohlrabi: the effect of cytokinins and sucrose. in 4th International Conference on Plant Biology [and] 23rd SPPS Meeting; 2022 Oct 6-8; Belgrade, Serbia. 2022;:24.
https://hdl.handle.net/21.15107/rcub_ibiss_5364 .

Ćosić, Tatjana, Motyka, Václav, Raspor, Martin, Sajid, Sumbal, Savić, Jelena, Devrnja, Nina, Dobrev, Petre I., Ninković, Slavica, "Phytohormone homeostasis in in vitro grown kohlrabi: the effect of cytokinins and sucrose" in 4th International Conference on Plant Biology [and] 23rd SPPS Meeting; 2022 Oct 6-8; Belgrade, Serbia (2022):24,
https://hdl.handle.net/21.15107/rcub_ibiss_5364 .

TY  - JOUR
AU  - Ćosić, Tatjana
AU  - Motyka, Vaclav
AU  - Raspor, Martin
AU  - Sajid, Sumbal
AU  - Devrnja, Nina
AU  - Dobrev, Petre I.
AU  - Ninković, Slavica
PY  - 2022
UR  - http://radar.ibiss.bg.ac.rs/handle/123456789/5117
AB  - The establishment of an efficient protocol for in vitro growth and regeneration of kohlrabi (Brassica oleracea var. gongylodes) allowed us to closely examine the phytohormone profiles of kohlrabi seedlings at four growth stages (T1–T4), additionally including the effects of cytokinins (CKs)—trans-zeatin (transZ) and thidiazuron (TDZ)—and high sucrose concentrations (6% and 9%). Resulting phytohormone profiles showed complex time-course patterns. At the T2 stage of control kohlrabi plantlets (with two emerged true leaves), levels of endogenous CK free bases and gibberellin GA20 increased, while increases in jasmonic acid (JA), JA-isoleucine (JA-Ile), indole-3-acetic acid (IAA) and indole-3-acetamide (IAM) peaked later, at T3. At the same time, the content of most of the analyzed IAA metabolites decreased. Supplementing growth media with CK induced de novo formation of shoots, while both CK and sucrose treatments caused important changes in most of the phytohormone groups at each developmental stage, compared to control. Principal component analysis (PCA) showed that sucrose treatment, especially at 9%, had a stronger effect on the content of endogenous hormones than CK treatments. Correlation analysis showed that the dynamic balance between the levels of certain bioactive phytohormone forms and some of their metabolites could be lost or reversed at particular growth stages and under certain CK or sucrose treatments, with correlation values changing between strongly positive and strongly negative. Our results indicate that the kohlrabi phytohormonome is a highly dynamic system that changes greatly along the developmental time scale and also during de novo shoot formation, depending on exogenous factors such as the presence of growth regulators and different sucrose concentrations in the growth media, and that it interacts intensively with these factors to facilitate certain responses.
PB  - Basel: MDPI
T2  - Life
T1  - Comprehensive Phytohormone Profiling of Kohlrabi during In Vitro Growth and Regeneration: The Interplay with Cytokinin and Sucrose
IS  - 10
VL  - 12
DO  - 10.3390/life12101585
SP  - 1585
ER  - 

@article{
author = "Ćosić, Tatjana and Motyka, Vaclav and Raspor, Martin and Sajid, Sumbal and Devrnja, Nina and Dobrev, Petre I. and Ninković, Slavica",
year = "2022",
abstract = "The establishment of an efficient protocol for in vitro growth and regeneration of kohlrabi (Brassica oleracea var. gongylodes) allowed us to closely examine the phytohormone profiles of kohlrabi seedlings at four growth stages (T1–T4), additionally including the effects of cytokinins (CKs)—trans-zeatin (transZ) and thidiazuron (TDZ)—and high sucrose concentrations (6% and 9%). Resulting phytohormone profiles showed complex time-course patterns. At the T2 stage of control kohlrabi plantlets (with two emerged true leaves), levels of endogenous CK free bases and gibberellin GA20 increased, while increases in jasmonic acid (JA), JA-isoleucine (JA-Ile), indole-3-acetic acid (IAA) and indole-3-acetamide (IAM) peaked later, at T3. At the same time, the content of most of the analyzed IAA metabolites decreased. Supplementing growth media with CK induced de novo formation of shoots, while both CK and sucrose treatments caused important changes in most of the phytohormone groups at each developmental stage, compared to control. Principal component analysis (PCA) showed that sucrose treatment, especially at 9%, had a stronger effect on the content of endogenous hormones than CK treatments. Correlation analysis showed that the dynamic balance between the levels of certain bioactive phytohormone forms and some of their metabolites could be lost or reversed at particular growth stages and under certain CK or sucrose treatments, with correlation values changing between strongly positive and strongly negative. Our results indicate that the kohlrabi phytohormonome is a highly dynamic system that changes greatly along the developmental time scale and also during de novo shoot formation, depending on exogenous factors such as the presence of growth regulators and different sucrose concentrations in the growth media, and that it interacts intensively with these factors to facilitate certain responses.",
publisher = "Basel: MDPI",
journal = "Life",
title = "Comprehensive Phytohormone Profiling of Kohlrabi during In Vitro Growth and Regeneration: The Interplay with Cytokinin and Sucrose",
number = "10",
volume = "12",
doi = "10.3390/life12101585",
pages = "1585"
}

Ćosić, T., Motyka, V., Raspor, M., Sajid, S., Devrnja, N., Dobrev, P. I.,& Ninković, S.. (2022). Comprehensive Phytohormone Profiling of Kohlrabi during In Vitro Growth and Regeneration: The Interplay with Cytokinin and Sucrose. in Life
Basel: MDPI., 12(10), 1585.
https://doi.org/10.3390/life12101585

Ćosić T, Motyka V, Raspor M, Sajid S, Devrnja N, Dobrev PI, Ninković S. Comprehensive Phytohormone Profiling of Kohlrabi during In Vitro Growth and Regeneration: The Interplay with Cytokinin and Sucrose. in Life. 2022;12(10):1585.
doi:10.3390/life12101585 .

Ćosić, Tatjana, Motyka, Vaclav, Raspor, Martin, Sajid, Sumbal, Devrnja, Nina, Dobrev, Petre I., Ninković, Slavica, "Comprehensive Phytohormone Profiling of Kohlrabi during In Vitro Growth and Regeneration: The Interplay with Cytokinin and Sucrose" in Life, 12, no. 10 (2022):1585,
https://doi.org/10.3390/life12101585 . .

TY  - JOUR
AU  - Napar, Wado Photo Faqir
AU  - Kaleri, Abdul Rasheed
AU  - Ahmed, Awais
AU  - Nabi, Farhan
AU  - Sajid, Sumbal
AU  - Ćosić, Tatjana
AU  - Yao, Yinan
AU  - Liu, Jikai
AU  - Raspor, Martin
AU  - Gao, Yongfeng
PY  - 2022
UR  - http://radar.ibiss.bg.ac.rs/handle/123456789/4869
AB  - Tomato cultivation is affected by high soil salinity and drought stress, which cause major yield losses worldwide. In this work, we compare the efficiency of mechanisms of tolerance to salinity, and osmotic stress applied as mannitol or drought, in three tomato genotypes: LA-2838 (Ailsa Craig), LA-2662 (Saladette), and LA-1996 (Anthocyanin  fruit  – Aft),  a  genotype  known  for  high  anthocyanin  content. Exposure  to  salinity  or   drought induced  stress  in  all three  genotypes,  but the  LA-1996 plants displayed  superior tolerance to stress compared with the other two genotypes. They were more efficient in anthocyanin and proline accumulation, superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT) activity, and leaf Na+, K+, and Ca2+ homeostasis. In addition, they suffered lesser oxidative damage as measured by chlorophyll (Chl) loss and malondialdehyde (MDA) accumulation, and bioassays showed that they were less affected in terms of seed germination and root elongation. Exposure to stress induced the upregulation of stress-related genes SlNCED1, SlAREB1, SlABF4, SlWRKY8, and SlDREB2A more efficiently in LA-1996 than in the two susceptible genotypes. Conversely, the upregulation of the NADPH oxidase gene SlRBOH1 was more pronounced in LA-2838 and LA-2662. Principal component analysis showed obvious distinction between the tolerant genotype LA-1996 and the susceptible LA- 2838 and LA-2662 in response to stress, and association of leaf and stem anthocyanin content with major stress tolerance traits. We suggest that anthocyanin accumulation can be considered as a marker of stress tolerance in tomato, and that LA-1996 can be considered for cultivation in salinity- or drought-affected areas.
PB  - Elsevier GmbH
T2  - Journal of Plant Physiology
T1  - The anthocyanin-rich tomato genotype LA-1996 displays superior efficiency of mechanisms of tolerance to salinity and drought
IS  - 271
DO  - 10.1016/j.jplph.2022.153662
SP  - 153662
ER  - 

@article{
author = "Napar, Wado Photo Faqir and Kaleri, Abdul Rasheed and Ahmed, Awais and Nabi, Farhan and Sajid, Sumbal and Ćosić, Tatjana and Yao, Yinan and Liu, Jikai and Raspor, Martin and Gao, Yongfeng",
year = "2022",
abstract = "Tomato cultivation is affected by high soil salinity and drought stress, which cause major yield losses worldwide. In this work, we compare the efficiency of mechanisms of tolerance to salinity, and osmotic stress applied as mannitol or drought, in three tomato genotypes: LA-2838 (Ailsa Craig), LA-2662 (Saladette), and LA-1996 (Anthocyanin  fruit  – Aft),  a  genotype  known  for  high  anthocyanin  content. Exposure  to  salinity  or   drought induced  stress  in  all three  genotypes,  but the  LA-1996 plants displayed  superior tolerance to stress compared with the other two genotypes. They were more efficient in anthocyanin and proline accumulation, superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT) activity, and leaf Na+, K+, and Ca2+ homeostasis. In addition, they suffered lesser oxidative damage as measured by chlorophyll (Chl) loss and malondialdehyde (MDA) accumulation, and bioassays showed that they were less affected in terms of seed germination and root elongation. Exposure to stress induced the upregulation of stress-related genes SlNCED1, SlAREB1, SlABF4, SlWRKY8, and SlDREB2A more efficiently in LA-1996 than in the two susceptible genotypes. Conversely, the upregulation of the NADPH oxidase gene SlRBOH1 was more pronounced in LA-2838 and LA-2662. Principal component analysis showed obvious distinction between the tolerant genotype LA-1996 and the susceptible LA- 2838 and LA-2662 in response to stress, and association of leaf and stem anthocyanin content with major stress tolerance traits. We suggest that anthocyanin accumulation can be considered as a marker of stress tolerance in tomato, and that LA-1996 can be considered for cultivation in salinity- or drought-affected areas.",
publisher = "Elsevier GmbH",
journal = "Journal of Plant Physiology",
title = "The anthocyanin-rich tomato genotype LA-1996 displays superior efficiency of mechanisms of tolerance to salinity and drought",
number = "271",
doi = "10.1016/j.jplph.2022.153662",
pages = "153662"
}

Napar, W. P. F., Kaleri, A. R., Ahmed, A., Nabi, F., Sajid, S., Ćosić, T., Yao, Y., Liu, J., Raspor, M.,& Gao, Y.. (2022). The anthocyanin-rich tomato genotype LA-1996 displays superior efficiency of mechanisms of tolerance to salinity and drought. in Journal of Plant Physiology
Elsevier GmbH.(271), 153662.
https://doi.org/10.1016/j.jplph.2022.153662

Napar WPF, Kaleri AR, Ahmed A, Nabi F, Sajid S, Ćosić T, Yao Y, Liu J, Raspor M, Gao Y. The anthocyanin-rich tomato genotype LA-1996 displays superior efficiency of mechanisms of tolerance to salinity and drought. in Journal of Plant Physiology. 2022;(271):153662.
doi:10.1016/j.jplph.2022.153662 .

Napar, Wado Photo Faqir, Kaleri, Abdul Rasheed, Ahmed, Awais, Nabi, Farhan, Sajid, Sumbal, Ćosić, Tatjana, Yao, Yinan, Liu, Jikai, Raspor, Martin, Gao, Yongfeng, "The anthocyanin-rich tomato genotype LA-1996 displays superior efficiency of mechanisms of tolerance to salinity and drought" in Journal of Plant Physiology, no. 271 (2022):153662,
https://doi.org/10.1016/j.jplph.2022.153662 . .

TY  - JOUR
AU  - Yang, Guotao
AU  - Nabi, Farhan
AU  - Sajid, Sumbal
AU  - Kaleri, Abdul Rasheed
AU  - Jakhar, Ali Murad
AU  - Cheng, Liang
AU  - Raspor, Martin
AU  - Muhammad, Noor
AU  - Ma, Jun
AU  - Hu, Yungao
PY  - 2021
UR  - https://link.springer.com/10.1007/s11033-021-06835-7
UR  - https://radar.ibiss.bg.ac.rs/handle/123456789/4637
AB  - BACKGROUND Chemical fertilization helped modern agriculture in grain yield improvement to ensure food security. The response of chemical fertilization for higher hybrid rice production is highly dependent on optimal fertilization management in paddy fields. To assess such responses, in the current work we examine the yield, root growth, and expression of related genes responsible for stress metabolism of nitrogen (N) and phosphorus (P) in two hybrid-rice cultivars Deyou4727 (D47) and Yixiangyou2115 (Y21). METHODS AND RESULTS The experiment followed four nitrogen (N) (N0, N60, N120, and N180 kg/ha) and phosphorus (P) (P0, P60, P90, and P120 kg/ha) fertilizer levels. The grain yield in D47 was more sensitive to nitrogen application, while Y21 was more sensitive to phosphorus application, which resulted in comparatively higher biomass and yield. Our findings were corroborated by gene expression studies of glutamine synthetase OsGS1;1 and OsGS1;2 and phosphate starvation-related genes PHR1 and SPX, confirming sensitivity to N and P application. The number of roots was less sensitive to nitrogen application in D47 between N0 and N60, but the overall nutrient response difference was significantly higher due to the deep rooting system as compared to Y21. CONCLUSIONS The higher yield, high N and P use efficiency, and versatile root growth of D47 make it suitable to reduce unproductive usage of N and P from paddy fields, improving hybrid rice productivity, and environmental safety in the Sichuan basin area of China.
PB  - Springer Science and Business Media B.V.
T2  - Molecular Biology Reports
T1  - Response of root development and nutrient uptake of two chinese cultivars of hybrid rice to nitrogen and phosphorus fertilization in Sichuan Province, China.
IS  - 12
VL  - 48
DO  - 10.1007/s11033-021-06835-7
SP  - 8009
EP  - 821
ER  - 

@article{
author = "Yang, Guotao and Nabi, Farhan and Sajid, Sumbal and Kaleri, Abdul Rasheed and Jakhar, Ali Murad and Cheng, Liang and Raspor, Martin and Muhammad, Noor and Ma, Jun and Hu, Yungao",
year = "2021",
abstract = "BACKGROUND Chemical fertilization helped modern agriculture in grain yield improvement to ensure food security. The response of chemical fertilization for higher hybrid rice production is highly dependent on optimal fertilization management in paddy fields. To assess such responses, in the current work we examine the yield, root growth, and expression of related genes responsible for stress metabolism of nitrogen (N) and phosphorus (P) in two hybrid-rice cultivars Deyou4727 (D47) and Yixiangyou2115 (Y21). METHODS AND RESULTS The experiment followed four nitrogen (N) (N0, N60, N120, and N180 kg/ha) and phosphorus (P) (P0, P60, P90, and P120 kg/ha) fertilizer levels. The grain yield in D47 was more sensitive to nitrogen application, while Y21 was more sensitive to phosphorus application, which resulted in comparatively higher biomass and yield. Our findings were corroborated by gene expression studies of glutamine synthetase OsGS1;1 and OsGS1;2 and phosphate starvation-related genes PHR1 and SPX, confirming sensitivity to N and P application. The number of roots was less sensitive to nitrogen application in D47 between N0 and N60, but the overall nutrient response difference was significantly higher due to the deep rooting system as compared to Y21. CONCLUSIONS The higher yield, high N and P use efficiency, and versatile root growth of D47 make it suitable to reduce unproductive usage of N and P from paddy fields, improving hybrid rice productivity, and environmental safety in the Sichuan basin area of China.",
publisher = "Springer Science and Business Media B.V.",
journal = "Molecular Biology Reports",
title = "Response of root development and nutrient uptake of two chinese cultivars of hybrid rice to nitrogen and phosphorus fertilization in Sichuan Province, China.",
number = "12",
volume = "48",
doi = "10.1007/s11033-021-06835-7",
pages = "8009-821"
}

Yang, G., Nabi, F., Sajid, S., Kaleri, A. R., Jakhar, A. M., Cheng, L., Raspor, M., Muhammad, N., Ma, J.,& Hu, Y.. (2021). Response of root development and nutrient uptake of two chinese cultivars of hybrid rice to nitrogen and phosphorus fertilization in Sichuan Province, China.. in Molecular Biology Reports
Springer Science and Business Media B.V.., 48(12), 8009-821.
https://doi.org/10.1007/s11033-021-06835-7

Yang G, Nabi F, Sajid S, Kaleri AR, Jakhar AM, Cheng L, Raspor M, Muhammad N, Ma J, Hu Y. Response of root development and nutrient uptake of two chinese cultivars of hybrid rice to nitrogen and phosphorus fertilization in Sichuan Province, China.. in Molecular Biology Reports. 2021;48(12):8009-821.
doi:10.1007/s11033-021-06835-7 .

Yang, Guotao, Nabi, Farhan, Sajid, Sumbal, Kaleri, Abdul Rasheed, Jakhar, Ali Murad, Cheng, Liang, Raspor, Martin, Muhammad, Noor, Ma, Jun, Hu, Yungao, "Response of root development and nutrient uptake of two chinese cultivars of hybrid rice to nitrogen and phosphorus fertilization in Sichuan Province, China." in Molecular Biology Reports, 48, no. 12 (2021):8009-821,
https://doi.org/10.1007/s11033-021-06835-7 . .