TY  - JOUR
AU  - Naydenov, Krassimir D.
AU  - Naydenov, Michel K.
AU  - Alexandrov, Alexander
AU  - Gurov, Todor
AU  - Gyuleva, Veselka
AU  - Hinkov, Georgi
AU  - Ivanovska, Sofiya
AU  - Tsarev, Anatoly
AU  - Nikolić, Biljana
AU  - Goudiaby, Venceslas
AU  - Carcaillet, Christopher
AU  - Volosyanchuk, Roman
AU  - Bojović, Srđan
AU  - Vasilevski, Kole
AU  - Matevski, Vlado
AU  - Peruzzi, Lorenzo
AU  - Christou, Andreas
AU  - Paitaridou, Despina
AU  - Goia, Irina
AU  - Kamary, Salim
AU  - Gulcu, Suleyman
AU  - Ture, Cengiz
AU  - Bogunić, Faruk
PY  - 2023
UR  - https://link.springer.com/10.1007/s10342-022-01513-0
UR  - http://radar.ibiss.bg.ac.rs/handle/123456789/5460
AB  - Here, from macrophylogeographic mtDNA empirical data, we propose a scenario for the evolution and speciation of two important forest trees, European black pine and Scotch pine, and their multiple subspecies and varieties. Molecular clock simulations revealed that INDEL variability in the Pinus mitochondrial genome is relatively old, i.e., from the Pliocene-Miocene epoch, and related to historical tectonic continental fluctuations rather than to climate change at a large geographic scale. For conservation and management biodiversity program recommendations, special attention is given to the relationships between different speciation models, historical migration patterns, and differences between peripheral and central populations. Species evolution involves the mixing of different speciation modes, and every speciation mode has different effects on different DNA types (e.g., mitochondrial vs. chloroplast vs. nuclear DNA). The misbalance between the contributions of different meta-population census sizes vs. effective population sizes to asymmetric migration patterns is the result of different genotypes (and subphylogenetic lines) responding to selection pressure and adaptive evolution. We propose initial minimal size of conservation unit (between 3 and 5 ha) from central and marginal natural area of distribution for both species in the dynamic management system for practical forest genetic diversity management. The proposed physical sizes were determined by the effective population size, effective radius of seed distribution data, forest density age dynamics, succession pattern, natural selection pressing and species biology [R-17].
T2  - European Journal of Forest Research
T1  - Speciation and historical migration pattern interaction: examples from P. nigra and P. sylvestris phylogeography
IS  - 1
VL  - 142
DO  - 10.1007/s10342-022-01513-0
SP  - 1
EP  - 26
ER  - 

@article{
author = "Naydenov, Krassimir D. and Naydenov, Michel K. and Alexandrov, Alexander and Gurov, Todor and Gyuleva, Veselka and Hinkov, Georgi and Ivanovska, Sofiya and Tsarev, Anatoly and Nikolić, Biljana and Goudiaby, Venceslas and Carcaillet, Christopher and Volosyanchuk, Roman and Bojović, Srđan and Vasilevski, Kole and Matevski, Vlado and Peruzzi, Lorenzo and Christou, Andreas and Paitaridou, Despina and Goia, Irina and Kamary, Salim and Gulcu, Suleyman and Ture, Cengiz and Bogunić, Faruk",
year = "2023",
abstract = "Here, from macrophylogeographic mtDNA empirical data, we propose a scenario for the evolution and speciation of two important forest trees, European black pine and Scotch pine, and their multiple subspecies and varieties. Molecular clock simulations revealed that INDEL variability in the Pinus mitochondrial genome is relatively old, i.e., from the Pliocene-Miocene epoch, and related to historical tectonic continental fluctuations rather than to climate change at a large geographic scale. For conservation and management biodiversity program recommendations, special attention is given to the relationships between different speciation models, historical migration patterns, and differences between peripheral and central populations. Species evolution involves the mixing of different speciation modes, and every speciation mode has different effects on different DNA types (e.g., mitochondrial vs. chloroplast vs. nuclear DNA). The misbalance between the contributions of different meta-population census sizes vs. effective population sizes to asymmetric migration patterns is the result of different genotypes (and subphylogenetic lines) responding to selection pressure and adaptive evolution. We propose initial minimal size of conservation unit (between 3 and 5 ha) from central and marginal natural area of distribution for both species in the dynamic management system for practical forest genetic diversity management. The proposed physical sizes were determined by the effective population size, effective radius of seed distribution data, forest density age dynamics, succession pattern, natural selection pressing and species biology [R-17].",
journal = "European Journal of Forest Research",
title = "Speciation and historical migration pattern interaction: examples from P. nigra and P. sylvestris phylogeography",
number = "1",
volume = "142",
doi = "10.1007/s10342-022-01513-0",
pages = "1-26"
}

Naydenov, K. D., Naydenov, M. K., Alexandrov, A., Gurov, T., Gyuleva, V., Hinkov, G., Ivanovska, S., Tsarev, A., Nikolić, B., Goudiaby, V., Carcaillet, C., Volosyanchuk, R., Bojović, S., Vasilevski, K., Matevski, V., Peruzzi, L., Christou, A., Paitaridou, D., Goia, I., Kamary, S., Gulcu, S., Ture, C.,& Bogunić, F.. (2023). Speciation and historical migration pattern interaction: examples from P. nigra and P. sylvestris phylogeography. in European Journal of Forest Research, 142(1), 1-26.
https://doi.org/10.1007/s10342-022-01513-0

Naydenov KD, Naydenov MK, Alexandrov A, Gurov T, Gyuleva V, Hinkov G, Ivanovska S, Tsarev A, Nikolić B, Goudiaby V, Carcaillet C, Volosyanchuk R, Bojović S, Vasilevski K, Matevski V, Peruzzi L, Christou A, Paitaridou D, Goia I, Kamary S, Gulcu S, Ture C, Bogunić F. Speciation and historical migration pattern interaction: examples from P. nigra and P. sylvestris phylogeography. in European Journal of Forest Research. 2023;142(1):1-26.
doi:10.1007/s10342-022-01513-0 .

Naydenov, Krassimir D., Naydenov, Michel K., Alexandrov, Alexander, Gurov, Todor, Gyuleva, Veselka, Hinkov, Georgi, Ivanovska, Sofiya, Tsarev, Anatoly, Nikolić, Biljana, Goudiaby, Venceslas, Carcaillet, Christopher, Volosyanchuk, Roman, Bojović, Srđan, Vasilevski, Kole, Matevski, Vlado, Peruzzi, Lorenzo, Christou, Andreas, Paitaridou, Despina, Goia, Irina, Kamary, Salim, Gulcu, Suleyman, Ture, Cengiz, Bogunić, Faruk, "Speciation and historical migration pattern interaction: examples from P. nigra and P. sylvestris phylogeography" in European Journal of Forest Research, 142, no. 1 (2023):1-26,
https://doi.org/10.1007/s10342-022-01513-0 . .

TY  - GEN
AU  - Bojović, Srđan
AU  - Naydenov, Krassimir D.
AU  - Naydenov, Michel K.
AU  - Alexandrov, Alexander
AU  - Vasilevski, Kole
AU  - Hinkov, Georgi
AU  - Matevski, Vlado
AU  - Nikolić, Biljana
AU  - Goudiaby, Venceslas
AU  - Riegert, Dave
AU  - Paitaridou, Despina
AU  - Christou, Andreas
AU  - Goia, Irina
AU  - Carcaillet, Christopher
AU  - Escudero Alcantara, Adrian
AU  - Ture, Cengiz
AU  - Gulcu, Suleyman
AU  - Gyuleva, Veselka
AU  - Peruzzi, Lorenzo
AU  - Kamary, Salim
AU  - Tsarev, Anatoly
AU  - Bogunic, Faruk
PY  - 2017
UR  - http://link.springer.com/10.1007/s10342-017-1069-9
UR  - https://radar.ibiss.bg.ac.rs/handle/123456789/2845
AB  - The historical changes in European Black Pine population size across the whole natural distribution in Europe and Asia Minor were analyzed facing the Plio-Pleistocene climatic fluctuations. Thirteen chloroplast SSRs and SNPs markers have been studied under the assumptions of “neutral evolution.” Populations and meta-populations had different histories of migration routes, and they were strongly affected by complex patterns of isolation, fragmentation, speciation, expansion (1.88–4.28 Ma), purification selection (2.09–21.41 Ma) and bottleneck (1.85–21.76 Ma). A significant number of populations (min. 29–41%) were in equilibrium for very long periods. Generally, the bottleneck revealed by chloroplast DNA is weaker than the bottleneck revealed by nuclear DNA. The N e immediately after the bottleneck reaches between 1820 and 3640 individuals. Generally, the historical effective population sizes shrink significantly for the Tertiary period from 10–15 up to 2.5 Ma in Western Europe (by 82%), followed by Asia Minor (69%) and the Balkan Peninsula (28%), likely resulting from important climatic changes. The rates and frequencies of stepwise westwards migration waves have been not sufficient to prevent isolation between the meta-populations and to suppress “sympatric speciation.” The migration was weak for the Pliocene, but was maximal for the Pleistocene, and finally silent for the present interglacial period, namely the Holocene.
T2  - European Journal of Forest Research
T1  - Ancient genetic bottleneck and Plio-Pleistocene climatic changes imprinted the phylobiogeography of European Black Pine populations
DO  - 10.1007/s10342-017-1069-9
ER  - 

@misc{
author = "Bojović, Srđan and Naydenov, Krassimir D. and Naydenov, Michel K. and Alexandrov, Alexander and Vasilevski, Kole and Hinkov, Georgi and Matevski, Vlado and Nikolić, Biljana and Goudiaby, Venceslas and Riegert, Dave and Paitaridou, Despina and Christou, Andreas and Goia, Irina and Carcaillet, Christopher and Escudero Alcantara, Adrian and Ture, Cengiz and Gulcu, Suleyman and Gyuleva, Veselka and Peruzzi, Lorenzo and Kamary, Salim and Tsarev, Anatoly and Bogunic, Faruk",
year = "2017",
abstract = "The historical changes in European Black Pine population size across the whole natural distribution in Europe and Asia Minor were analyzed facing the Plio-Pleistocene climatic fluctuations. Thirteen chloroplast SSRs and SNPs markers have been studied under the assumptions of “neutral evolution.” Populations and meta-populations had different histories of migration routes, and they were strongly affected by complex patterns of isolation, fragmentation, speciation, expansion (1.88–4.28 Ma), purification selection (2.09–21.41 Ma) and bottleneck (1.85–21.76 Ma). A significant number of populations (min. 29–41%) were in equilibrium for very long periods. Generally, the bottleneck revealed by chloroplast DNA is weaker than the bottleneck revealed by nuclear DNA. The N e immediately after the bottleneck reaches between 1820 and 3640 individuals. Generally, the historical effective population sizes shrink significantly for the Tertiary period from 10–15 up to 2.5 Ma in Western Europe (by 82%), followed by Asia Minor (69%) and the Balkan Peninsula (28%), likely resulting from important climatic changes. The rates and frequencies of stepwise westwards migration waves have been not sufficient to prevent isolation between the meta-populations and to suppress “sympatric speciation.” The migration was weak for the Pliocene, but was maximal for the Pleistocene, and finally silent for the present interglacial period, namely the Holocene.",
journal = "European Journal of Forest Research",
title = "Ancient genetic bottleneck and Plio-Pleistocene climatic changes imprinted the phylobiogeography of European Black Pine populations",
doi = "10.1007/s10342-017-1069-9"
}

Bojović, S., Naydenov, K. D., Naydenov, M. K., Alexandrov, A., Vasilevski, K., Hinkov, G., Matevski, V., Nikolić, B., Goudiaby, V., Riegert, D., Paitaridou, D., Christou, A., Goia, I., Carcaillet, C., Escudero Alcantara, A., Ture, C., Gulcu, S., Gyuleva, V., Peruzzi, L., Kamary, S., Tsarev, A.,& Bogunic, F.. (2017). Ancient genetic bottleneck and Plio-Pleistocene climatic changes imprinted the phylobiogeography of European Black Pine populations. in European Journal of Forest Research.
https://doi.org/10.1007/s10342-017-1069-9

Bojović S, Naydenov KD, Naydenov MK, Alexandrov A, Vasilevski K, Hinkov G, Matevski V, Nikolić B, Goudiaby V, Riegert D, Paitaridou D, Christou A, Goia I, Carcaillet C, Escudero Alcantara A, Ture C, Gulcu S, Gyuleva V, Peruzzi L, Kamary S, Tsarev A, Bogunic F. Ancient genetic bottleneck and Plio-Pleistocene climatic changes imprinted the phylobiogeography of European Black Pine populations. in European Journal of Forest Research. 2017;.
doi:10.1007/s10342-017-1069-9 .

Bojović, Srđan, Naydenov, Krassimir D., Naydenov, Michel K., Alexandrov, Alexander, Vasilevski, Kole, Hinkov, Georgi, Matevski, Vlado, Nikolić, Biljana, Goudiaby, Venceslas, Riegert, Dave, Paitaridou, Despina, Christou, Andreas, Goia, Irina, Carcaillet, Christopher, Escudero Alcantara, Adrian, Ture, Cengiz, Gulcu, Suleyman, Gyuleva, Veselka, Peruzzi, Lorenzo, Kamary, Salim, Tsarev, Anatoly, Bogunic, Faruk, "Ancient genetic bottleneck and Plio-Pleistocene climatic changes imprinted the phylobiogeography of European Black Pine populations" in European Journal of Forest Research (2017),
https://doi.org/10.1007/s10342-017-1069-9 . .