TY  - CONF
AU  - Kolarević, Stoimir
AU  - Micsinai, Adrienn
AU  - Szanto-Egesz, Reka
AU  - Lukacs, Alena
AU  - Kračun-Kolarević, Margareta
AU  - Jovanović Marić, Jovana
AU  - Đorđević, Ana
AU  - Vojnović-Milutinović, Danijela
AU  - Kirschner, Alexander
AU  - Farnleitner, Andreas
AU  - Linke, Rita
AU  - Đukić, Aleksandar
AU  - Kostić, Jovana
AU  - Sunjog, Karolina
AU  - Paunović, Momir
PY  - 2024
UR  - http://radar.ibiss.bg.ac.rs/handle/123456789/6693
AB  - Pollution of surface waters still represents one of the major environmental challenges in the Republic of Serbia, where wastewaters are discharged directly into the recipients without proper treatment. Within the last decade, we have assessed the microbiological water quality of more than 100 sites situated at different water bodies in Serbia. Quality was determined using faecal indicator bacteria, while microbial source tracking was employed to assess the source of pollution. Almost 50 % of the investigated sites were characterized by critical or even higher level of faecal contamination indicating that untreated wastewaters indeed represent significant pollution pressure on surface waters. Human-associated markers were prevalent in samples from the majority of contaminated sites but the source of pollution was not exclusively human-associated. 
The impact on the water quality of the Danube River was demonstrated in our previous research conducted at the whole river level within the Joint Danube Surveys. In the river stretch from Novi Sad to its confluence with the Velika Morava River, all the midstream samples were critically polluted. In this section, the highest level of pollution was recorded downstream of Belgrade. As ultimate recipients of wastewaters, Danube and its largest tributary Sava currently represent the only solution for disposing of wastewaters originating from the Serbian capital‘s 1,700,000 inhabitants. Such kind of disposal rises additional issues such as antimicrobial resistance and presence of infectious agents in water. For instance during COVID-19 pandemic, we have demonstrated that SARS-CoV-2 RNA can be detected even in surface waters of the Danube River at the sites receiving high wastewater loads from Belgrade which was the unique case for the Basin. 
Despites its extreme importance in this case, wastewater-based epidemiology is neglected in our country and hereby we would like to emphasize the need for implementation of program of such kind in Serbia.
PB  - Belgrade: Serbian Society for Microbiology
C3  - Book of abstracts: 13th Congress of Microbiologists of Serbia: Mikromed Regio 5: From biotechnology to human and planetary health; 2024 Apr 4-6; Belgrade, Serbia
T1  - Impact of untreated wastewaters on the microbiological water quality  of the Danube River  and its tributaries in Serbia
SP  - 65
UR  - https://hdl.handle.net/21.15107/rcub_ibiss_6693
ER  - 

@conference{
author = "Kolarević, Stoimir and Micsinai, Adrienn and Szanto-Egesz, Reka and Lukacs, Alena and Kračun-Kolarević, Margareta and Jovanović Marić, Jovana and Đorđević, Ana and Vojnović-Milutinović, Danijela and Kirschner, Alexander and Farnleitner, Andreas and Linke, Rita and Đukić, Aleksandar and Kostić, Jovana and Sunjog, Karolina and Paunović, Momir",
year = "2024",
abstract = "Pollution of surface waters still represents one of the major environmental challenges in the Republic of Serbia, where wastewaters are discharged directly into the recipients without proper treatment. Within the last decade, we have assessed the microbiological water quality of more than 100 sites situated at different water bodies in Serbia. Quality was determined using faecal indicator bacteria, while microbial source tracking was employed to assess the source of pollution. Almost 50 % of the investigated sites were characterized by critical or even higher level of faecal contamination indicating that untreated wastewaters indeed represent significant pollution pressure on surface waters. Human-associated markers were prevalent in samples from the majority of contaminated sites but the source of pollution was not exclusively human-associated. 
The impact on the water quality of the Danube River was demonstrated in our previous research conducted at the whole river level within the Joint Danube Surveys. In the river stretch from Novi Sad to its confluence with the Velika Morava River, all the midstream samples were critically polluted. In this section, the highest level of pollution was recorded downstream of Belgrade. As ultimate recipients of wastewaters, Danube and its largest tributary Sava currently represent the only solution for disposing of wastewaters originating from the Serbian capital‘s 1,700,000 inhabitants. Such kind of disposal rises additional issues such as antimicrobial resistance and presence of infectious agents in water. For instance during COVID-19 pandemic, we have demonstrated that SARS-CoV-2 RNA can be detected even in surface waters of the Danube River at the sites receiving high wastewater loads from Belgrade which was the unique case for the Basin. 
Despites its extreme importance in this case, wastewater-based epidemiology is neglected in our country and hereby we would like to emphasize the need for implementation of program of such kind in Serbia.",
publisher = "Belgrade: Serbian Society for Microbiology",
journal = "Book of abstracts: 13th Congress of Microbiologists of Serbia: Mikromed Regio 5: From biotechnology to human and planetary health; 2024 Apr 4-6; Belgrade, Serbia",
title = "Impact of untreated wastewaters on the microbiological water quality  of the Danube River  and its tributaries in Serbia",
pages = "65",
url = "https://hdl.handle.net/21.15107/rcub_ibiss_6693"
}

Kolarević, S., Micsinai, A., Szanto-Egesz, R., Lukacs, A., Kračun-Kolarević, M., Jovanović Marić, J., Đorđević, A., Vojnović-Milutinović, D., Kirschner, A., Farnleitner, A., Linke, R., Đukić, A., Kostić, J., Sunjog, K.,& Paunović, M.. (2024). Impact of untreated wastewaters on the microbiological water quality  of the Danube River  and its tributaries in Serbia. in Book of abstracts: 13th Congress of Microbiologists of Serbia: Mikromed Regio 5: From biotechnology to human and planetary health; 2024 Apr 4-6; Belgrade, Serbia
Belgrade: Serbian Society for Microbiology., 65.
https://hdl.handle.net/21.15107/rcub_ibiss_6693

Kolarević S, Micsinai A, Szanto-Egesz R, Lukacs A, Kračun-Kolarević M, Jovanović Marić J, Đorđević A, Vojnović-Milutinović D, Kirschner A, Farnleitner A, Linke R, Đukić A, Kostić J, Sunjog K, Paunović M. Impact of untreated wastewaters on the microbiological water quality  of the Danube River  and its tributaries in Serbia. in Book of abstracts: 13th Congress of Microbiologists of Serbia: Mikromed Regio 5: From biotechnology to human and planetary health; 2024 Apr 4-6; Belgrade, Serbia. 2024;:65.
https://hdl.handle.net/21.15107/rcub_ibiss_6693 .

Kolarević, Stoimir, Micsinai, Adrienn, Szanto-Egesz, Reka, Lukacs, Alena, Kračun-Kolarević, Margareta, Jovanović Marić, Jovana, Đorđević, Ana, Vojnović-Milutinović, Danijela, Kirschner, Alexander, Farnleitner, Andreas, Linke, Rita, Đukić, Aleksandar, Kostić, Jovana, Sunjog, Karolina, Paunović, Momir, "Impact of untreated wastewaters on the microbiological water quality  of the Danube River  and its tributaries in Serbia" in Book of abstracts: 13th Congress of Microbiologists of Serbia: Mikromed Regio 5: From biotechnology to human and planetary health; 2024 Apr 4-6; Belgrade, Serbia (2024):65,
https://hdl.handle.net/21.15107/rcub_ibiss_6693 .

TY  - JOUR
AU  - Schachner-Gröhs, Iris
AU  - Koller, Michael
AU  - Leopold, Melanie
AU  - Kolm, Claudia
AU  - Linke, Rita
AU  - Jakwerth, Stefan
AU  - Kolarević, Stoimir
AU  - Kračun-Kolarević, Margareta
AU  - Kandler, Wolfgang
AU  - Sulyok, Michael
AU  - Vierheilig, Julia
AU  - Toumi, Marwene
AU  - Farkas, Rózsa
AU  - Toth, Erika
AU  - Kittinger, Clemens
AU  - Zarfel, Gernot
AU  - Farnleitner, Andreas
AU  - Kirschner, Alexander
PY  - 2024
UR  - http://radar.ibiss.bg.ac.rs/handle/123456789/6581
AB  - The global spread of antimicrobial resistance (AMR) in the environment is a growing health threat. Large rivers are of particular concern as they are highly impacted by wastewater discharge while being vital lifelines serving various human needs. A comprehensive understanding of occurrence, spread and key drivers of AMR along whole river courses is largely lacking. We provide a holistic approach by studying spatiotemporal patterns and hotspots of antibiotic resistance genes (ARGs) along 2311 km of the navigable Danube River, combining a longitudinal and temporal monitoring campaign. The integration of advanced faecal pollution diagnostics and environmental and chemical key parameters allowed linking ARG concentrations to the major pollution sources and explaining the observed patterns. Nine AMR markers, including genes conferring resistance to five different antibiotic classes of clinical and environmental relevance, and one integrase gene were determined by probe-based qPCR. All AMR targets could be quantified in Danube River water, with intI1 and sul1 being ubiquitously abundant, qnrS, tetM, blaTEM with intermediate abundance and blaOXA-48like, blaCTX−M-1 group, blaCTX−M-9 group and blaKPC genes with rare occurrence. Human faecal pollution from municipal wastewater discharges was the dominant factor shaping ARG patterns along the Danube River. Other significant correlations of specific ARGs were observed with discharge, certain metals and pesticides. In contrast, intI1 was not associated with wastewater but was already established in the water microbiome. Animal contamination was detected only sporadically and was correlated with ARGs only in the temporal sampling set. During temporal monitoring, an extraordinary hotspot was identified emphasizing the variability within natural waters. This study provides the first comprehensive baseline concentrations of ARGs in the Danube River and lays the foundation for monitoring future trends and evaluating potential reduction measures. The applided holistic approach proved to be a valuable methodological contribution towards a better understanding of the environmental occurrence of AMR.
PB  - Elsevier
T2  - Water Research
T1  - Linking antibiotic resistance gene patterns with advanced faecal pollution assessment and environmental key parameters along 2300 km of the Danube River
VL  - 252
DO  - 10.1016/j.watres.2024.121244
SP  - 121244
ER  - 

@article{
author = "Schachner-Gröhs, Iris and Koller, Michael and Leopold, Melanie and Kolm, Claudia and Linke, Rita and Jakwerth, Stefan and Kolarević, Stoimir and Kračun-Kolarević, Margareta and Kandler, Wolfgang and Sulyok, Michael and Vierheilig, Julia and Toumi, Marwene and Farkas, Rózsa and Toth, Erika and Kittinger, Clemens and Zarfel, Gernot and Farnleitner, Andreas and Kirschner, Alexander",
year = "2024",
abstract = "The global spread of antimicrobial resistance (AMR) in the environment is a growing health threat. Large rivers are of particular concern as they are highly impacted by wastewater discharge while being vital lifelines serving various human needs. A comprehensive understanding of occurrence, spread and key drivers of AMR along whole river courses is largely lacking. We provide a holistic approach by studying spatiotemporal patterns and hotspots of antibiotic resistance genes (ARGs) along 2311 km of the navigable Danube River, combining a longitudinal and temporal monitoring campaign. The integration of advanced faecal pollution diagnostics and environmental and chemical key parameters allowed linking ARG concentrations to the major pollution sources and explaining the observed patterns. Nine AMR markers, including genes conferring resistance to five different antibiotic classes of clinical and environmental relevance, and one integrase gene were determined by probe-based qPCR. All AMR targets could be quantified in Danube River water, with intI1 and sul1 being ubiquitously abundant, qnrS, tetM, blaTEM with intermediate abundance and blaOXA-48like, blaCTX−M-1 group, blaCTX−M-9 group and blaKPC genes with rare occurrence. Human faecal pollution from municipal wastewater discharges was the dominant factor shaping ARG patterns along the Danube River. Other significant correlations of specific ARGs were observed with discharge, certain metals and pesticides. In contrast, intI1 was not associated with wastewater but was already established in the water microbiome. Animal contamination was detected only sporadically and was correlated with ARGs only in the temporal sampling set. During temporal monitoring, an extraordinary hotspot was identified emphasizing the variability within natural waters. This study provides the first comprehensive baseline concentrations of ARGs in the Danube River and lays the foundation for monitoring future trends and evaluating potential reduction measures. The applided holistic approach proved to be a valuable methodological contribution towards a better understanding of the environmental occurrence of AMR.",
publisher = "Elsevier",
journal = "Water Research",
title = "Linking antibiotic resistance gene patterns with advanced faecal pollution assessment and environmental key parameters along 2300 km of the Danube River",
volume = "252",
doi = "10.1016/j.watres.2024.121244",
pages = "121244"
}

Schachner-Gröhs, I., Koller, M., Leopold, M., Kolm, C., Linke, R., Jakwerth, S., Kolarević, S., Kračun-Kolarević, M., Kandler, W., Sulyok, M., Vierheilig, J., Toumi, M., Farkas, R., Toth, E., Kittinger, C., Zarfel, G., Farnleitner, A.,& Kirschner, A.. (2024). Linking antibiotic resistance gene patterns with advanced faecal pollution assessment and environmental key parameters along 2300 km of the Danube River. in Water Research
Elsevier., 252, 121244.
https://doi.org/10.1016/j.watres.2024.121244

Schachner-Gröhs I, Koller M, Leopold M, Kolm C, Linke R, Jakwerth S, Kolarević S, Kračun-Kolarević M, Kandler W, Sulyok M, Vierheilig J, Toumi M, Farkas R, Toth E, Kittinger C, Zarfel G, Farnleitner A, Kirschner A. Linking antibiotic resistance gene patterns with advanced faecal pollution assessment and environmental key parameters along 2300 km of the Danube River. in Water Research. 2024;252:121244.
doi:10.1016/j.watres.2024.121244 .

Schachner-Gröhs, Iris, Koller, Michael, Leopold, Melanie, Kolm, Claudia, Linke, Rita, Jakwerth, Stefan, Kolarević, Stoimir, Kračun-Kolarević, Margareta, Kandler, Wolfgang, Sulyok, Michael, Vierheilig, Julia, Toumi, Marwene, Farkas, Rózsa, Toth, Erika, Kittinger, Clemens, Zarfel, Gernot, Farnleitner, Andreas, Kirschner, Alexander, "Linking antibiotic resistance gene patterns with advanced faecal pollution assessment and environmental key parameters along 2300 km of the Danube River" in Water Research, 252 (2024):121244,
https://doi.org/10.1016/j.watres.2024.121244 . .

TY  - CONF
AU  - Kolarević, Stoimir
AU  - Adrienn, Micsinai
AU  - Szanto-Egesz, Reka
AU  - Lukacs, Alena
AU  - Kračun-Kolarević, Margareta
AU  - Jovanović Marić, Jovana
AU  - Đorđević, Ana
AU  - Vojnović-Milutinović, Danijela
AU  - Kirschner, Alexander
AU  - Farnleitner, Andreas
AU  - Linke, Rita
AU  - Đukić, Aleksandar
AU  - Kostić, Jovana
AU  - Sunjog, Karolina
AU  - Paunović, Momir
PY  - 2023
UR  - http://radar.ibiss.bg.ac.rs/handle/123456789/6591
AB  - Pollution of natural water bodies is one of the biggest challenges in developing countries, such as
Serbia, where wastewater is discharged directly into the recipients without proper treatment and
poses serious threats to surface water quality, general safety and environmental health. Numerous
pathogenic microorganisms, bacteria, viruses, protozoa and helminthes may reach surface waters
and eventually contaminate groundwater. Despites its extreme importance in this case,
implementation of wastewater-based epidemiology is a challenge for developing countries, as the
majority of households are not connected to sewerage systems. Within our research, we have placed
major focus on recipients of wastewaters as an alternative of targeting raw wastewater. During the
fourth COVID-19 wave in Serbia that started in late February 2021 multiple water samples were
collected at 12 sites at Sava and Danube Rivers in the Belgrade city area which are under the impact
of untreated wastewaters.
SARS-CoV-2 RNA was quantified using RT-qPCR with primer sets targeting nucleocapsid (N1 and N2)
and envelope (E) protein genes. Microbiological (standard fecal indicator bacteria and microbial
faecal source tracking markers), epidemiological, physico-chemical and hydro-morphological
parameters were analysed in parallel. Out of 44 samples analyzed, 31 were positive for at least one
of the target regions of SARS-CoV-2. The results indicated that surveillance of SARS-CoV-2 RNA in
surface waters in context with the large amount of epidemiological and environmental metadata can
be used as epidemiological early-warning tool in countries with poor wastewater treatment.
PB  - Austrian Committee - International Association for Danube Research
C3  - Conference Book: 44th IAD conference: Tackling Present & Future Environmental Challenges of a European Riverscape; 2023 Feb 6-9; Krems, Austria
T1  - Applicability of wastewater based epidemiology in countries with poor wastewater treatment – COVID-19 case study in Serbia
SP  - 11
UR  - https://hdl.handle.net/21.15107/rcub_ibiss_6591
ER  - 

@conference{
author = "Kolarević, Stoimir and Adrienn, Micsinai and Szanto-Egesz, Reka and Lukacs, Alena and Kračun-Kolarević, Margareta and Jovanović Marić, Jovana and Đorđević, Ana and Vojnović-Milutinović, Danijela and Kirschner, Alexander and Farnleitner, Andreas and Linke, Rita and Đukić, Aleksandar and Kostić, Jovana and Sunjog, Karolina and Paunović, Momir",
year = "2023",
abstract = "Pollution of natural water bodies is one of the biggest challenges in developing countries, such as
Serbia, where wastewater is discharged directly into the recipients without proper treatment and
poses serious threats to surface water quality, general safety and environmental health. Numerous
pathogenic microorganisms, bacteria, viruses, protozoa and helminthes may reach surface waters
and eventually contaminate groundwater. Despites its extreme importance in this case,
implementation of wastewater-based epidemiology is a challenge for developing countries, as the
majority of households are not connected to sewerage systems. Within our research, we have placed
major focus on recipients of wastewaters as an alternative of targeting raw wastewater. During the
fourth COVID-19 wave in Serbia that started in late February 2021 multiple water samples were
collected at 12 sites at Sava and Danube Rivers in the Belgrade city area which are under the impact
of untreated wastewaters.
SARS-CoV-2 RNA was quantified using RT-qPCR with primer sets targeting nucleocapsid (N1 and N2)
and envelope (E) protein genes. Microbiological (standard fecal indicator bacteria and microbial
faecal source tracking markers), epidemiological, physico-chemical and hydro-morphological
parameters were analysed in parallel. Out of 44 samples analyzed, 31 were positive for at least one
of the target regions of SARS-CoV-2. The results indicated that surveillance of SARS-CoV-2 RNA in
surface waters in context with the large amount of epidemiological and environmental metadata can
be used as epidemiological early-warning tool in countries with poor wastewater treatment.",
publisher = "Austrian Committee - International Association for Danube Research",
journal = "Conference Book: 44th IAD conference: Tackling Present & Future Environmental Challenges of a European Riverscape; 2023 Feb 6-9; Krems, Austria",
title = "Applicability of wastewater based epidemiology in countries with poor wastewater treatment – COVID-19 case study in Serbia",
pages = "11",
url = "https://hdl.handle.net/21.15107/rcub_ibiss_6591"
}

Kolarević, S., Adrienn, M., Szanto-Egesz, R., Lukacs, A., Kračun-Kolarević, M., Jovanović Marić, J., Đorđević, A., Vojnović-Milutinović, D., Kirschner, A., Farnleitner, A., Linke, R., Đukić, A., Kostić, J., Sunjog, K.,& Paunović, M.. (2023). Applicability of wastewater based epidemiology in countries with poor wastewater treatment – COVID-19 case study in Serbia. in Conference Book: 44th IAD conference: Tackling Present & Future Environmental Challenges of a European Riverscape; 2023 Feb 6-9; Krems, Austria
Austrian Committee - International Association for Danube Research., 11.
https://hdl.handle.net/21.15107/rcub_ibiss_6591

Kolarević S, Adrienn M, Szanto-Egesz R, Lukacs A, Kračun-Kolarević M, Jovanović Marić J, Đorđević A, Vojnović-Milutinović D, Kirschner A, Farnleitner A, Linke R, Đukić A, Kostić J, Sunjog K, Paunović M. Applicability of wastewater based epidemiology in countries with poor wastewater treatment – COVID-19 case study in Serbia. in Conference Book: 44th IAD conference: Tackling Present & Future Environmental Challenges of a European Riverscape; 2023 Feb 6-9; Krems, Austria. 2023;:11.
https://hdl.handle.net/21.15107/rcub_ibiss_6591 .

Kolarević, Stoimir, Adrienn, Micsinai, Szanto-Egesz, Reka, Lukacs, Alena, Kračun-Kolarević, Margareta, Jovanović Marić, Jovana, Đorđević, Ana, Vojnović-Milutinović, Danijela, Kirschner, Alexander, Farnleitner, Andreas, Linke, Rita, Đukić, Aleksandar, Kostić, Jovana, Sunjog, Karolina, Paunović, Momir, "Applicability of wastewater based epidemiology in countries with poor wastewater treatment – COVID-19 case study in Serbia" in Conference Book: 44th IAD conference: Tackling Present & Future Environmental Challenges of a European Riverscape; 2023 Feb 6-9; Krems, Austria (2023):11,
https://hdl.handle.net/21.15107/rcub_ibiss_6591 .

TY  - CONF
AU  - Koller, Michel
AU  - Dielacher, Irina
AU  - Schachner, Iris
AU  - Leopold, Melanie
AU  - Jakwerth, Sefan
AU  - Kolarević, Stoimir
AU  - Kračun-Kolarević, Margareta
AU  - Toth, Erika
AU  - Savio, Domenico
AU  - Farnleitner, Andreas
AU  - Kittinger, Clemens
AU  - Kirschner, Alexander
AU  - Zarfel, Gernot
PY  - 2023
UR  - http://radar.ibiss.bg.ac.rs/handle/123456789/6593
AB  - Human induced antibiotic resistant bacteria (ARB) are not only found in clinical surroundings: large
rivers are of great concern as regards their spreading. This ongoing study´s aim is to analyse the
major propagation pathways and sources of ARB in the Danube, and to compare the results with
data obtained in 2013. Escherichia coli and Klebsiella spp. isolated during the 4th Joint Danube
Survey (2019) were tested for their antibiotic susceptibility. 22.24% of 1700 E. coli were resistant and
12.35% were multiresistant. 15.23 % of 696 Klebsiella spp. were resistant and 1.15% were
multiresistant. In comparison the data of 2013 and 2019 of both Enterobacteriaceae showed that the
wild type is still predominant. There were significant increases especially to fluoroquinolones and
augmentin and a significant decrease of resistances to tetracycline. However, the data of JDS4
showed a significant difference between E. coli and Klebsiella spp. regarding wild type, resistance and
multiresistance. Additionally, data of 1155 E. coli showed no seasonal trends in Austria during an
annual sampling. The comparison of E. coli from biofilms and corresponding water samples revealed
several significant differences between the compartments. In conclusion, the preliminary data of E.
coli from biofilm samples suggest that the biofilm as a stable colonization within waters reflects
especially the long term situation. Thus, the stabilizing and destabilizing effects acting on ARG within
the biofilm need to be researched in greater detail. Significant differences between the closely
related Enterobacteriaceae species seem to point out the dilemma of E. coli as a solely model
organism for environmental long term effects. Klebsiella spp. and their associated ARGs are facing a
different selective pressure when encountering the native environmental populations. Finally, the
results of the annual sampling campaign suggest that single environmental differences have a higher
impact than seasonal events.
PB  - Austrian Committee - International Association for Danube Research
C3  - Conference Book: 44th IAD conference: Tackling Present & Future Environmental Challenges of a European Riverscape; 2023 Feb 6-9; Krems, Austria
T1  - The Danube's water and biofilms: Antimicrobial resistance in the Enterobacteriaceae populations
SP  - 24
UR  - https://hdl.handle.net/21.15107/rcub_ibiss_6593
ER  - 

@conference{
author = "Koller, Michel and Dielacher, Irina and Schachner, Iris and Leopold, Melanie and Jakwerth, Sefan and Kolarević, Stoimir and Kračun-Kolarević, Margareta and Toth, Erika and Savio, Domenico and Farnleitner, Andreas and Kittinger, Clemens and Kirschner, Alexander and Zarfel, Gernot",
year = "2023",
abstract = "Human induced antibiotic resistant bacteria (ARB) are not only found in clinical surroundings: large
rivers are of great concern as regards their spreading. This ongoing study´s aim is to analyse the
major propagation pathways and sources of ARB in the Danube, and to compare the results with
data obtained in 2013. Escherichia coli and Klebsiella spp. isolated during the 4th Joint Danube
Survey (2019) were tested for their antibiotic susceptibility. 22.24% of 1700 E. coli were resistant and
12.35% were multiresistant. 15.23 % of 696 Klebsiella spp. were resistant and 1.15% were
multiresistant. In comparison the data of 2013 and 2019 of both Enterobacteriaceae showed that the
wild type is still predominant. There were significant increases especially to fluoroquinolones and
augmentin and a significant decrease of resistances to tetracycline. However, the data of JDS4
showed a significant difference between E. coli and Klebsiella spp. regarding wild type, resistance and
multiresistance. Additionally, data of 1155 E. coli showed no seasonal trends in Austria during an
annual sampling. The comparison of E. coli from biofilms and corresponding water samples revealed
several significant differences between the compartments. In conclusion, the preliminary data of E.
coli from biofilm samples suggest that the biofilm as a stable colonization within waters reflects
especially the long term situation. Thus, the stabilizing and destabilizing effects acting on ARG within
the biofilm need to be researched in greater detail. Significant differences between the closely
related Enterobacteriaceae species seem to point out the dilemma of E. coli as a solely model
organism for environmental long term effects. Klebsiella spp. and their associated ARGs are facing a
different selective pressure when encountering the native environmental populations. Finally, the
results of the annual sampling campaign suggest that single environmental differences have a higher
impact than seasonal events.",
publisher = "Austrian Committee - International Association for Danube Research",
journal = "Conference Book: 44th IAD conference: Tackling Present & Future Environmental Challenges of a European Riverscape; 2023 Feb 6-9; Krems, Austria",
title = "The Danube's water and biofilms: Antimicrobial resistance in the Enterobacteriaceae populations",
pages = "24",
url = "https://hdl.handle.net/21.15107/rcub_ibiss_6593"
}

Koller, M., Dielacher, I., Schachner, I., Leopold, M., Jakwerth, S., Kolarević, S., Kračun-Kolarević, M., Toth, E., Savio, D., Farnleitner, A., Kittinger, C., Kirschner, A.,& Zarfel, G.. (2023). The Danube's water and biofilms: Antimicrobial resistance in the Enterobacteriaceae populations. in Conference Book: 44th IAD conference: Tackling Present & Future Environmental Challenges of a European Riverscape; 2023 Feb 6-9; Krems, Austria
Austrian Committee - International Association for Danube Research., 24.
https://hdl.handle.net/21.15107/rcub_ibiss_6593

Koller M, Dielacher I, Schachner I, Leopold M, Jakwerth S, Kolarević S, Kračun-Kolarević M, Toth E, Savio D, Farnleitner A, Kittinger C, Kirschner A, Zarfel G. The Danube's water and biofilms: Antimicrobial resistance in the Enterobacteriaceae populations. in Conference Book: 44th IAD conference: Tackling Present & Future Environmental Challenges of a European Riverscape; 2023 Feb 6-9; Krems, Austria. 2023;:24.
https://hdl.handle.net/21.15107/rcub_ibiss_6593 .

Koller, Michel, Dielacher, Irina, Schachner, Iris, Leopold, Melanie, Jakwerth, Sefan, Kolarević, Stoimir, Kračun-Kolarević, Margareta, Toth, Erika, Savio, Domenico, Farnleitner, Andreas, Kittinger, Clemens, Kirschner, Alexander, Zarfel, Gernot, "The Danube's water and biofilms: Antimicrobial resistance in the Enterobacteriaceae populations" in Conference Book: 44th IAD conference: Tackling Present & Future Environmental Challenges of a European Riverscape; 2023 Feb 6-9; Krems, Austria (2023):24,
https://hdl.handle.net/21.15107/rcub_ibiss_6593 .

TY  - CONF
AU  - Schachner-Gröhs, Iris
AU  - Kolm, Claudia
AU  - Vierheilig, Julia
AU  - Leopold, Melanie
AU  - Zarfel, Gernot
AU  - Koller, Michael
AU  - Kittinger, Clemens
AU  - Jakwerth, Stefan
AU  - Linke, Rita
AU  - Kolarević, Stoimir
AU  - Kračun-Kolarević, Margareta
AU  - Toth, Erika
AU  - Farnleitner, Andreas
AU  - Kirschner, Alexander
PY  - 2023
UR  - http://radar.ibiss.bg.ac.rs/handle/123456789/6590
AB  - Antimicrobial resistance (AMR) represents one of the top ten global public health threats according
to the WHO. The spread of resistances is no longer limited to clinical settings and the natural
environment, especially aquatic ecosystems, are also strongly involved in the global spread. Holistic
as well as quantitative studies are still scarce. We here present for the first time a large scale study
on the Danube River regarding the distribution of AMR along different faecal pollution patterns.
For this study, samples from an international sampling campaign (Joint Danube Survey 4) as well as
additional seasonal samples were screened for the occurrence and origin of faecal pollution and for
the concentrations of nine representative antibiotic resistance genes (ARGs). In addition to water
samples also river biofilms were monitored to account for both, temporal and permanent river
habitats. Analyses were amended by a set of different cultivation-based and non-cultivation-based
microbiological and environmental data to explain the observed pattern in faecal pollution and ARG
concentrations.
Faecal pollution exists and varied strongly along the whole Danube river; hotspots could be identified
downstream of metropolitan areas at which also substantial concentrations of ARGs could be
detected. Quantifying concentrations of ARGs conferring resistance to different antibiotic classes
revealed strong differences between the different genes. Comparing their presence in water and
biofilm samples, allowed to assess how stably present these genes already are in the Danube River
ecosystem.
Environmental surveys are necessary to establish environmental baselines, to be able to guide future
AMR monitoring as well as to enforce useful management strategies. This integrative study therefore
provides first insights in the antimicrobial resistance situation in the most international river in the
world and second largest river in Europe
PB  - Austrian Committee - International Association for Danube Research
C3  - Conference Book: 44th IAD conference: Tackling Present & Future Environmental Challenges of a European Riverscape; 2023 Feb 6-9; Krems, Austria
T1  - Occurrence of antibiotic resistance genes along gradients of faecal pollution in water and biofilm samples from the whole Danube River
SP  - 25
UR  - https://hdl.handle.net/21.15107/rcub_ibiss_6590
ER  - 

@conference{
author = "Schachner-Gröhs, Iris and Kolm, Claudia and Vierheilig, Julia and Leopold, Melanie and Zarfel, Gernot and Koller, Michael and Kittinger, Clemens and Jakwerth, Stefan and Linke, Rita and Kolarević, Stoimir and Kračun-Kolarević, Margareta and Toth, Erika and Farnleitner, Andreas and Kirschner, Alexander",
year = "2023",
abstract = "Antimicrobial resistance (AMR) represents one of the top ten global public health threats according
to the WHO. The spread of resistances is no longer limited to clinical settings and the natural
environment, especially aquatic ecosystems, are also strongly involved in the global spread. Holistic
as well as quantitative studies are still scarce. We here present for the first time a large scale study
on the Danube River regarding the distribution of AMR along different faecal pollution patterns.
For this study, samples from an international sampling campaign (Joint Danube Survey 4) as well as
additional seasonal samples were screened for the occurrence and origin of faecal pollution and for
the concentrations of nine representative antibiotic resistance genes (ARGs). In addition to water
samples also river biofilms were monitored to account for both, temporal and permanent river
habitats. Analyses were amended by a set of different cultivation-based and non-cultivation-based
microbiological and environmental data to explain the observed pattern in faecal pollution and ARG
concentrations.
Faecal pollution exists and varied strongly along the whole Danube river; hotspots could be identified
downstream of metropolitan areas at which also substantial concentrations of ARGs could be
detected. Quantifying concentrations of ARGs conferring resistance to different antibiotic classes
revealed strong differences between the different genes. Comparing their presence in water and
biofilm samples, allowed to assess how stably present these genes already are in the Danube River
ecosystem.
Environmental surveys are necessary to establish environmental baselines, to be able to guide future
AMR monitoring as well as to enforce useful management strategies. This integrative study therefore
provides first insights in the antimicrobial resistance situation in the most international river in the
world and second largest river in Europe",
publisher = "Austrian Committee - International Association for Danube Research",
journal = "Conference Book: 44th IAD conference: Tackling Present & Future Environmental Challenges of a European Riverscape; 2023 Feb 6-9; Krems, Austria",
title = "Occurrence of antibiotic resistance genes along gradients of faecal pollution in water and biofilm samples from the whole Danube River",
pages = "25",
url = "https://hdl.handle.net/21.15107/rcub_ibiss_6590"
}

Schachner-Gröhs, I., Kolm, C., Vierheilig, J., Leopold, M., Zarfel, G., Koller, M., Kittinger, C., Jakwerth, S., Linke, R., Kolarević, S., Kračun-Kolarević, M., Toth, E., Farnleitner, A.,& Kirschner, A.. (2023). Occurrence of antibiotic resistance genes along gradients of faecal pollution in water and biofilm samples from the whole Danube River. in Conference Book: 44th IAD conference: Tackling Present & Future Environmental Challenges of a European Riverscape; 2023 Feb 6-9; Krems, Austria
Austrian Committee - International Association for Danube Research., 25.
https://hdl.handle.net/21.15107/rcub_ibiss_6590

Schachner-Gröhs I, Kolm C, Vierheilig J, Leopold M, Zarfel G, Koller M, Kittinger C, Jakwerth S, Linke R, Kolarević S, Kračun-Kolarević M, Toth E, Farnleitner A, Kirschner A. Occurrence of antibiotic resistance genes along gradients of faecal pollution in water and biofilm samples from the whole Danube River. in Conference Book: 44th IAD conference: Tackling Present & Future Environmental Challenges of a European Riverscape; 2023 Feb 6-9; Krems, Austria. 2023;:25.
https://hdl.handle.net/21.15107/rcub_ibiss_6590 .

Schachner-Gröhs, Iris, Kolm, Claudia, Vierheilig, Julia, Leopold, Melanie, Zarfel, Gernot, Koller, Michael, Kittinger, Clemens, Jakwerth, Stefan, Linke, Rita, Kolarević, Stoimir, Kračun-Kolarević, Margareta, Toth, Erika, Farnleitner, Andreas, Kirschner, Alexander, "Occurrence of antibiotic resistance genes along gradients of faecal pollution in water and biofilm samples from the whole Danube River" in Conference Book: 44th IAD conference: Tackling Present & Future Environmental Challenges of a European Riverscape; 2023 Feb 6-9; Krems, Austria (2023):25,
https://hdl.handle.net/21.15107/rcub_ibiss_6590 .

TY  - CONF
AU  - Koller, Michael
AU  - Nürnberger, Julia
AU  - Hack, Kerstin
AU  - Dielacher, Irina
AU  - Wachter, Julian
AU  - Hoffer, Benjamin
AU  - Kohlmaier, Sophie
AU  - Hagendorfer, Christin
AU  - Kapic, Medina
AU  - Julia, Gütl
AU  - Arsenijevic, Polina
AU  - Schachner, Iris
AU  - Jakwerth, Stefan
AU  - Kolarević, Stoimir
AU  - Kračun-Kolarević, Margareta
AU  - Tóth, Erika
AU  - Savio, Domenico
AU  - Farnleitner, Andreas H.
AU  - Kittinger, Clemens
AU  - Kirschner, Alexander K.T.
AU  - Zarfel, Gernot
PY  - 2022
UR  - http://radar.ibiss.bg.ac.rs/handle/123456789/6231
AB  - Human induced antibiotic resistant bacteria (ARB) are not only found in clinical surroundings: large rivers are of great concern as regards their spreading. This ongoing study´s aim is to analyse the major propagation pathways and sources of ARB in the Danube, and to compare the results with data obtained in 2013. Escherichia coli and Klebsiella spp. isolated during the 4th Joint Danube Survey were tested for their antibiotic susceptibility. 23.2% of 1635 E. coli were resistant and 11.7% were multiresistant. There was a significant increase in resistances to augmentin, moxifloxacin and piperacillin/tazobactam and a significant decrease regarding tetracycline. 23 expressed an extended-spectrum-beta-lactamase phenotype. 15.87 % of 630 Klebsiella spp. were resistant and 0.95% were multiresistant. Resistances
to moxifloxacin and augmentin were the most common resistances detected.
Two isolates showed an ESBL-phenotype, and two isolates were resistant to the last line antibiotic tigecycline. In comparison the data of 2013 and 2019 show a similar proportion for multiresistant E. coli, but regarding resistances to some single antibiotics significant changes were determined. In contrast, the Klebsiella isolates showed a very similar distribution of resistances. Despite, 30% of non-wild type resistant E. coli in the environment is a very high number when compared to clinical settings with approximately 50%. However, the relevance of these findings concerning human health and the environment is yet unclear as there is only a very limited number of studies for comparison and studies on the significance of pathways from the river back to humans are largely missing.
PB  - Belgrade: Serbian Society of Microbiology
C3  - Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia
T1  - Monitoring non-wild type antibiotic resistant Enterobacteriaceae in the River Danube: a six-year-comparison
SP  - 64
EP  - 65
UR  - https://hdl.handle.net/21.15107/rcub_ibiss_6231
ER  - 

@conference{
author = "Koller, Michael and Nürnberger, Julia and Hack, Kerstin and Dielacher, Irina and Wachter, Julian and Hoffer, Benjamin and Kohlmaier, Sophie and Hagendorfer, Christin and Kapic, Medina and Julia, Gütl and Arsenijevic, Polina and Schachner, Iris and Jakwerth, Stefan and Kolarević, Stoimir and Kračun-Kolarević, Margareta and Tóth, Erika and Savio, Domenico and Farnleitner, Andreas H. and Kittinger, Clemens and Kirschner, Alexander K.T. and Zarfel, Gernot",
year = "2022",
abstract = "Human induced antibiotic resistant bacteria (ARB) are not only found in clinical surroundings: large rivers are of great concern as regards their spreading. This ongoing study´s aim is to analyse the major propagation pathways and sources of ARB in the Danube, and to compare the results with data obtained in 2013. Escherichia coli and Klebsiella spp. isolated during the 4th Joint Danube Survey were tested for their antibiotic susceptibility. 23.2% of 1635 E. coli were resistant and 11.7% were multiresistant. There was a significant increase in resistances to augmentin, moxifloxacin and piperacillin/tazobactam and a significant decrease regarding tetracycline. 23 expressed an extended-spectrum-beta-lactamase phenotype. 15.87 % of 630 Klebsiella spp. were resistant and 0.95% were multiresistant. Resistances
to moxifloxacin and augmentin were the most common resistances detected.
Two isolates showed an ESBL-phenotype, and two isolates were resistant to the last line antibiotic tigecycline. In comparison the data of 2013 and 2019 show a similar proportion for multiresistant E. coli, but regarding resistances to some single antibiotics significant changes were determined. In contrast, the Klebsiella isolates showed a very similar distribution of resistances. Despite, 30% of non-wild type resistant E. coli in the environment is a very high number when compared to clinical settings with approximately 50%. However, the relevance of these findings concerning human health and the environment is yet unclear as there is only a very limited number of studies for comparison and studies on the significance of pathways from the river back to humans are largely missing.",
publisher = "Belgrade: Serbian Society of Microbiology",
journal = "Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia",
title = "Monitoring non-wild type antibiotic resistant Enterobacteriaceae in the River Danube: a six-year-comparison",
pages = "64-65",
url = "https://hdl.handle.net/21.15107/rcub_ibiss_6231"
}

Koller, M., Nürnberger, J., Hack, K., Dielacher, I., Wachter, J., Hoffer, B., Kohlmaier, S., Hagendorfer, C., Kapic, M., Julia, G., Arsenijevic, P., Schachner, I., Jakwerth, S., Kolarević, S., Kračun-Kolarević, M., Tóth, E., Savio, D., Farnleitner, A. H., Kittinger, C., Kirschner, A. K.T.,& Zarfel, G.. (2022). Monitoring non-wild type antibiotic resistant Enterobacteriaceae in the River Danube: a six-year-comparison. in Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia
Belgrade: Serbian Society of Microbiology., 64-65.
https://hdl.handle.net/21.15107/rcub_ibiss_6231

Koller M, Nürnberger J, Hack K, Dielacher I, Wachter J, Hoffer B, Kohlmaier S, Hagendorfer C, Kapic M, Julia G, Arsenijevic P, Schachner I, Jakwerth S, Kolarević S, Kračun-Kolarević M, Tóth E, Savio D, Farnleitner AH, Kittinger C, Kirschner AK, Zarfel G. Monitoring non-wild type antibiotic resistant Enterobacteriaceae in the River Danube: a six-year-comparison. in Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia. 2022;:64-65.
https://hdl.handle.net/21.15107/rcub_ibiss_6231 .

Koller, Michael, Nürnberger, Julia, Hack, Kerstin, Dielacher, Irina, Wachter, Julian, Hoffer, Benjamin, Kohlmaier, Sophie, Hagendorfer, Christin, Kapic, Medina, Julia, Gütl, Arsenijevic, Polina, Schachner, Iris, Jakwerth, Stefan, Kolarević, Stoimir, Kračun-Kolarević, Margareta, Tóth, Erika, Savio, Domenico, Farnleitner, Andreas H., Kittinger, Clemens, Kirschner, Alexander K.T., Zarfel, Gernot, "Monitoring non-wild type antibiotic resistant Enterobacteriaceae in the River Danube: a six-year-comparison" in Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia (2022):64-65,
https://hdl.handle.net/21.15107/rcub_ibiss_6231 .

TY  - CONF
AU  - Kirschner, Alexander K.T.
AU  - Schachner, Iris
AU  - Jakwerth, Stefan
AU  - Zarfel, Gernot
AU  - Koller, Michael
AU  - Kittinger, Clemens
AU  - Tóth, Erika
AU  - Kolarević, Stoimir
AU  - Kračun-Kolarević, Margareta
AU  - Blaschke, Alfred Paul
AU  - Derx, Julia
AU  - Linke, Rita
AU  - Demeter, Katalin
AU  - Reischer, Georg
AU  - Savio, Domenico
AU  - Farnleitner, Andreas H.
PY  - 2022
UR  - http://radar.ibiss.bg.ac.rs/handle/123456789/6232
AB  - Sustainable and target-oriented microbiological water quality management of rivers needs information on
whole river systems, especially if catchments are large and international. The microbiological water quality
of rivers is of uttermost relevance for human health as river water is used for several purposes (recreation,
drinking water production, irrigation). Besides information on faecal pollution levels, the origin of faecal
pollution and the assessment of associated infection- and health risks, e g. from antimicrobial resistant bacteria (ARB) are of increasing importance. This contribution summarizes the concepts and main results from the Joint-Danube-Surveys (JDS) and discusses future challenges and perspectives (pollution-scenario modelling, infection-risk assessment) for the Danube River concerning its faecal and AMR pollution status.
Between 2001 and 2019, the whole Danube was sampled four times during the JDS. Beside standard faecal indicator analysis, cutting-edge molecular detection concepts were applied, including microbial source tracking (MST) markers by quantitative PCR (qPCR) and high-throughput amplicon-sequencing of bacterial communities. For AMR-profiling, clinically relevant bacterial species were isolated and tested for resistances and resistance genes were determined via qPCR.
With this, we could impressively demonstrate that the JDS create the required multi-national “big picture”
of the microbiological pollution status of large rivers. Harmonised trans-border microbiological water quality aps for the whole navigable Danube were established. MST marker analysis elucidated that the main faecal pollution source along the whole river is human wastewater. Combined analysis of faecal indicators, MST and AMR-profiles provided a solid basis for assessing the potential health impacts of AMR associated with faecal pollution.
PB  - Belgrade: Serbian Society of Microbiology
C3  - Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia
T1  - Faecal pollution and antibiotic resistance in the Danube River: Vision, Concepts and Lessons learned from Joint Danube Surveys
SP  - 144
EP  - 145
UR  - https://hdl.handle.net/21.15107/rcub_ibiss_6232
ER  - 

@conference{
author = "Kirschner, Alexander K.T. and Schachner, Iris and Jakwerth, Stefan and Zarfel, Gernot and Koller, Michael and Kittinger, Clemens and Tóth, Erika and Kolarević, Stoimir and Kračun-Kolarević, Margareta and Blaschke, Alfred Paul and Derx, Julia and Linke, Rita and Demeter, Katalin and Reischer, Georg and Savio, Domenico and Farnleitner, Andreas H.",
year = "2022",
abstract = "Sustainable and target-oriented microbiological water quality management of rivers needs information on
whole river systems, especially if catchments are large and international. The microbiological water quality
of rivers is of uttermost relevance for human health as river water is used for several purposes (recreation,
drinking water production, irrigation). Besides information on faecal pollution levels, the origin of faecal
pollution and the assessment of associated infection- and health risks, e g. from antimicrobial resistant bacteria (ARB) are of increasing importance. This contribution summarizes the concepts and main results from the Joint-Danube-Surveys (JDS) and discusses future challenges and perspectives (pollution-scenario modelling, infection-risk assessment) for the Danube River concerning its faecal and AMR pollution status.
Between 2001 and 2019, the whole Danube was sampled four times during the JDS. Beside standard faecal indicator analysis, cutting-edge molecular detection concepts were applied, including microbial source tracking (MST) markers by quantitative PCR (qPCR) and high-throughput amplicon-sequencing of bacterial communities. For AMR-profiling, clinically relevant bacterial species were isolated and tested for resistances and resistance genes were determined via qPCR.
With this, we could impressively demonstrate that the JDS create the required multi-national “big picture”
of the microbiological pollution status of large rivers. Harmonised trans-border microbiological water quality aps for the whole navigable Danube were established. MST marker analysis elucidated that the main faecal pollution source along the whole river is human wastewater. Combined analysis of faecal indicators, MST and AMR-profiles provided a solid basis for assessing the potential health impacts of AMR associated with faecal pollution.",
publisher = "Belgrade: Serbian Society of Microbiology",
journal = "Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia",
title = "Faecal pollution and antibiotic resistance in the Danube River: Vision, Concepts and Lessons learned from Joint Danube Surveys",
pages = "144-145",
url = "https://hdl.handle.net/21.15107/rcub_ibiss_6232"
}

Kirschner, A. K.T., Schachner, I., Jakwerth, S., Zarfel, G., Koller, M., Kittinger, C., Tóth, E., Kolarević, S., Kračun-Kolarević, M., Blaschke, A. P., Derx, J., Linke, R., Demeter, K., Reischer, G., Savio, D.,& Farnleitner, A. H.. (2022). Faecal pollution and antibiotic resistance in the Danube River: Vision, Concepts and Lessons learned from Joint Danube Surveys. in Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia
Belgrade: Serbian Society of Microbiology., 144-145.
https://hdl.handle.net/21.15107/rcub_ibiss_6232

Kirschner AK, Schachner I, Jakwerth S, Zarfel G, Koller M, Kittinger C, Tóth E, Kolarević S, Kračun-Kolarević M, Blaschke AP, Derx J, Linke R, Demeter K, Reischer G, Savio D, Farnleitner AH. Faecal pollution and antibiotic resistance in the Danube River: Vision, Concepts and Lessons learned from Joint Danube Surveys. in Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia. 2022;:144-145.
https://hdl.handle.net/21.15107/rcub_ibiss_6232 .

Kirschner, Alexander K.T., Schachner, Iris, Jakwerth, Stefan, Zarfel, Gernot, Koller, Michael, Kittinger, Clemens, Tóth, Erika, Kolarević, Stoimir, Kračun-Kolarević, Margareta, Blaschke, Alfred Paul, Derx, Julia, Linke, Rita, Demeter, Katalin, Reischer, Georg, Savio, Domenico, Farnleitner, Andreas H., "Faecal pollution and antibiotic resistance in the Danube River: Vision, Concepts and Lessons learned from Joint Danube Surveys" in Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia (2022):144-145,
https://hdl.handle.net/21.15107/rcub_ibiss_6232 .

TY  - CONF
AU  - Kolarević, Stoimir
AU  - Micsinai, Adrienn
AU  - Szántó-Egész, Réka
AU  - Lukács, Alena
AU  - Kračun-Kolarević, Margareta
AU  - Đorđević, Ana
AU  - Jovanović Marić, Jovana
AU  - Vojnović-Milutinović, Danijela
AU  - Kirschner, Alexander K.T.
AU  - Farnleitner, Andreas H.
AU  - Linke, Rita
AU  - Đukić, Aleksandar
AU  - Kostić, Jovana
AU  - Sunjog, Karolina
AU  - Paunović, Momir
PY  - 2022
UR  - http://radar.ibiss.bg.ac.rs/handle/123456789/6235
AB  - BACKGROUND
Prokaryotic assays are of great interest in eco/geno-toxicology as they are short-term, simple and cost effective. Application of strains of Salmonella typhimurium with modifications such as increased cell wall permeability and lack of excision repair system is common for the detection of genotoxicity. Various eukaryotic models have been developed lately, such as fish derived cell lines, which can mimic the response of the aquatic organisms. Considering different level of cell organization among these models, difference in sensitivity is expected, yet only few studies address this topic.
OBJECTIVES
The major objective was to investigate genotoxic potential of extracts of surface water of the Danube
and to compare the results obtained in applied prokaryotic and eukaryotic models.
METHODS
Surface water samples from 24 sites along the Danube River were extracted by LVSPE Horizon sampler providing relative enrichment factor (REF) of the extracts of 25,000x. For representative prokaryotic model the SOS/umuC assay with S. typhimurium TA1535/pSK1002 was used. Eukaryotic model comprised assessment of cytotoxicity by MTS test and assessment of genotoxicity by comet assay in ZFL (ZebraFish Liver) cells.
RESULTS
While none of the tested samples has induced SOS response, the result of MTS assay indicated that 11 of 24 samples were cytotoxic. In comet assay, genotoxic potential was found in 9 of 24 samples. Results indicated higher sensitivity of used eukaryotic model in comparison with prokaryotic. Applied prokaryotic assay is often suggested to be used as prescreening tool in diagnostics of genotoxic potential which by our opinion could be misleading.
PB  - Belgrade: Serbian Society of Microbiology
C3  - Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia
T1  - Wastewater based epidemiology in countries with poor wastewater treatment - SARS-CoV-2 RNA in surface waters
SP  - 614
EP  - 615
UR  - https://hdl.handle.net/21.15107/rcub_ibiss_6235
ER  - 

@conference{
author = "Kolarević, Stoimir and Micsinai, Adrienn and Szántó-Egész, Réka and Lukács, Alena and Kračun-Kolarević, Margareta and Đorđević, Ana and Jovanović Marić, Jovana and Vojnović-Milutinović, Danijela and Kirschner, Alexander K.T. and Farnleitner, Andreas H. and Linke, Rita and Đukić, Aleksandar and Kostić, Jovana and Sunjog, Karolina and Paunović, Momir",
year = "2022",
abstract = "BACKGROUND
Prokaryotic assays are of great interest in eco/geno-toxicology as they are short-term, simple and cost effective. Application of strains of Salmonella typhimurium with modifications such as increased cell wall permeability and lack of excision repair system is common for the detection of genotoxicity. Various eukaryotic models have been developed lately, such as fish derived cell lines, which can mimic the response of the aquatic organisms. Considering different level of cell organization among these models, difference in sensitivity is expected, yet only few studies address this topic.
OBJECTIVES
The major objective was to investigate genotoxic potential of extracts of surface water of the Danube
and to compare the results obtained in applied prokaryotic and eukaryotic models.
METHODS
Surface water samples from 24 sites along the Danube River were extracted by LVSPE Horizon sampler providing relative enrichment factor (REF) of the extracts of 25,000x. For representative prokaryotic model the SOS/umuC assay with S. typhimurium TA1535/pSK1002 was used. Eukaryotic model comprised assessment of cytotoxicity by MTS test and assessment of genotoxicity by comet assay in ZFL (ZebraFish Liver) cells.
RESULTS
While none of the tested samples has induced SOS response, the result of MTS assay indicated that 11 of 24 samples were cytotoxic. In comet assay, genotoxic potential was found in 9 of 24 samples. Results indicated higher sensitivity of used eukaryotic model in comparison with prokaryotic. Applied prokaryotic assay is often suggested to be used as prescreening tool in diagnostics of genotoxic potential which by our opinion could be misleading.",
publisher = "Belgrade: Serbian Society of Microbiology",
journal = "Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia",
title = "Wastewater based epidemiology in countries with poor wastewater treatment - SARS-CoV-2 RNA in surface waters",
pages = "614-615",
url = "https://hdl.handle.net/21.15107/rcub_ibiss_6235"
}

Kolarević, S., Micsinai, A., Szántó-Egész, R., Lukács, A., Kračun-Kolarević, M., Đorđević, A., Jovanović Marić, J., Vojnović-Milutinović, D., Kirschner, A. K.T., Farnleitner, A. H., Linke, R., Đukić, A., Kostić, J., Sunjog, K.,& Paunović, M.. (2022). Wastewater based epidemiology in countries with poor wastewater treatment - SARS-CoV-2 RNA in surface waters. in Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia
Belgrade: Serbian Society of Microbiology., 614-615.
https://hdl.handle.net/21.15107/rcub_ibiss_6235

Kolarević S, Micsinai A, Szántó-Egész R, Lukács A, Kračun-Kolarević M, Đorđević A, Jovanović Marić J, Vojnović-Milutinović D, Kirschner AK, Farnleitner AH, Linke R, Đukić A, Kostić J, Sunjog K, Paunović M. Wastewater based epidemiology in countries with poor wastewater treatment - SARS-CoV-2 RNA in surface waters. in Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia. 2022;:614-615.
https://hdl.handle.net/21.15107/rcub_ibiss_6235 .

Kolarević, Stoimir, Micsinai, Adrienn, Szántó-Egész, Réka, Lukács, Alena, Kračun-Kolarević, Margareta, Đorđević, Ana, Jovanović Marić, Jovana, Vojnović-Milutinović, Danijela, Kirschner, Alexander K.T., Farnleitner, Andreas H., Linke, Rita, Đukić, Aleksandar, Kostić, Jovana, Sunjog, Karolina, Paunović, Momir, "Wastewater based epidemiology in countries with poor wastewater treatment - SARS-CoV-2 RNA in surface waters" in Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia (2022):614-615,
https://hdl.handle.net/21.15107/rcub_ibiss_6235 .

TY  - CONF
AU  - Schachner, Iris
AU  - Kolm, Claudia
AU  - Vierheilig, Julia
AU  - Savio, Domenico
AU  - Zarfel, Gernot
AU  - Koller, Michael
AU  - Kittinger, Clemens
AU  - Jakwerth, Stefan
AU  - Linke, Rita
AU  - Kolarević, Stoimir
AU  - Kračun-Kolarević, Margareta
AU  - Tóth, Erika
AU  - Farnleitner, Andreas H.
AU  - Kirschner, Alexander K.T.
PY  - 2022
UR  - http://radar.ibiss.bg.ac.rs/handle/123456789/6230
AB  - Human-induced antimicrobial resistance is an emerging concern in aquatic environments. Faecal pollution
sources represent potential propagation pathways, however large-scale quantitative studies in whole river
systems are missing. In the course of the Joint Danube Survey, the Danube River was investigated for the
fourth time in summer 2019 from its headwaters to the delta. Microbial-faecal pollution patterns and the
occurrence of selected antibiotic resistance genes (ARGs) were studied. Subsequently, a one-year time series analysis at selected relevant sites allowed to assess temporal variability.
The intestinal bacterium Escherichia coli was quantified according to standard cultivation methods as indicator for total faecal pollution. In general, longitudinal patterns of faecal pollution showed a comparable picture to previous Joint Danube Surveys, with low to moderate pollution in the upper reaches (Germany, Austria) and critical to strong pollution in the middle and lower sections, especially in Serbia. Genetic microbial source tracking methods, determined via quantitative PCR, allowed us to define human faecal pollution as dominant pollution source along the whole Danube. This trend could be generally confirmed during the annual sampling campaign. To estimate the potential of permanent colonialization of faecal microorganisms within the Danube River ecosystem, biofilms as potential reservoirs were studied along the course of the entire river. Here, E.coli were ubiquitously present but highly variable. Ongoing analyses on the occurrence and quantity of selected ARGs will identify hotspots of antimicrobial resistance and their relationship to faecal pollution along the Danube River and thereby contribute to guide future monitoring and management strategies.
PB  - Belgrade: Serbian Society of Microbiology
C3  - Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia
T1  - Faecal pollution as potential driver of antibiotic resistance genes in the Danube River
SP  - 137
EP  - 138
UR  - https://hdl.handle.net/21.15107/rcub_ibiss_6230
ER  - 

@conference{
author = "Schachner, Iris and Kolm, Claudia and Vierheilig, Julia and Savio, Domenico and Zarfel, Gernot and Koller, Michael and Kittinger, Clemens and Jakwerth, Stefan and Linke, Rita and Kolarević, Stoimir and Kračun-Kolarević, Margareta and Tóth, Erika and Farnleitner, Andreas H. and Kirschner, Alexander K.T.",
year = "2022",
abstract = "Human-induced antimicrobial resistance is an emerging concern in aquatic environments. Faecal pollution
sources represent potential propagation pathways, however large-scale quantitative studies in whole river
systems are missing. In the course of the Joint Danube Survey, the Danube River was investigated for the
fourth time in summer 2019 from its headwaters to the delta. Microbial-faecal pollution patterns and the
occurrence of selected antibiotic resistance genes (ARGs) were studied. Subsequently, a one-year time series analysis at selected relevant sites allowed to assess temporal variability.
The intestinal bacterium Escherichia coli was quantified according to standard cultivation methods as indicator for total faecal pollution. In general, longitudinal patterns of faecal pollution showed a comparable picture to previous Joint Danube Surveys, with low to moderate pollution in the upper reaches (Germany, Austria) and critical to strong pollution in the middle and lower sections, especially in Serbia. Genetic microbial source tracking methods, determined via quantitative PCR, allowed us to define human faecal pollution as dominant pollution source along the whole Danube. This trend could be generally confirmed during the annual sampling campaign. To estimate the potential of permanent colonialization of faecal microorganisms within the Danube River ecosystem, biofilms as potential reservoirs were studied along the course of the entire river. Here, E.coli were ubiquitously present but highly variable. Ongoing analyses on the occurrence and quantity of selected ARGs will identify hotspots of antimicrobial resistance and their relationship to faecal pollution along the Danube River and thereby contribute to guide future monitoring and management strategies.",
publisher = "Belgrade: Serbian Society of Microbiology",
journal = "Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia",
title = "Faecal pollution as potential driver of antibiotic resistance genes in the Danube River",
pages = "137-138",
url = "https://hdl.handle.net/21.15107/rcub_ibiss_6230"
}

Schachner, I., Kolm, C., Vierheilig, J., Savio, D., Zarfel, G., Koller, M., Kittinger, C., Jakwerth, S., Linke, R., Kolarević, S., Kračun-Kolarević, M., Tóth, E., Farnleitner, A. H.,& Kirschner, A. K.T.. (2022). Faecal pollution as potential driver of antibiotic resistance genes in the Danube River. in Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia
Belgrade: Serbian Society of Microbiology., 137-138.
https://hdl.handle.net/21.15107/rcub_ibiss_6230

Schachner I, Kolm C, Vierheilig J, Savio D, Zarfel G, Koller M, Kittinger C, Jakwerth S, Linke R, Kolarević S, Kračun-Kolarević M, Tóth E, Farnleitner AH, Kirschner AK. Faecal pollution as potential driver of antibiotic resistance genes in the Danube River. in Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia. 2022;:137-138.
https://hdl.handle.net/21.15107/rcub_ibiss_6230 .

Schachner, Iris, Kolm, Claudia, Vierheilig, Julia, Savio, Domenico, Zarfel, Gernot, Koller, Michael, Kittinger, Clemens, Jakwerth, Stefan, Linke, Rita, Kolarević, Stoimir, Kračun-Kolarević, Margareta, Tóth, Erika, Farnleitner, Andreas H., Kirschner, Alexander K.T., "Faecal pollution as potential driver of antibiotic resistance genes in the Danube River" in Electronic abstract book: FEMS Conference on Microbiology in association with Serbian Society of Microbiology; 2022 Jun 30 - Jul 2; Belgrade, Serbia (2022):137-138,
https://hdl.handle.net/21.15107/rcub_ibiss_6230 .